Automated multi-scale computational pathotyping (AMSCP) of inflamed synovial tissue.

Autor: Bell RD; Arthritis and Tissue Degeneration Program and Research Institute, Hospital for Special Surgery, New York, NY, USA. bellr@hss.edu.; Weill Cornell Medical College, New York, NY, USA. bellr@hss.edu., Brendel M; Department of Population Health Sciences, Weill Cornell Medical College, New York, NY, USA., Konnaris MA; Huck Institute of the Life Sciences, Pennsylvania State University, State College, University Park, PA, USA.; Orthopedic Soft Tissue Research Program, Hospital for Special Surgery, New York, NY, USA., Xiang J; Horace Greely High School, Chappaqua, NY, USA., Otero M; Weill Cornell Medical College, New York, NY, USA.; Orthopedic Soft Tissue Research Program, Hospital for Special Surgery, New York, NY, USA., Fontana MA; Arthritis and Tissue Degeneration Program and Research Institute, Hospital for Special Surgery, New York, NY, USA.; Department of Population Health Sciences, Weill Cornell Medical College, New York, NY, USA., Bai Z; Department of Population Health Sciences, Weill Cornell Medical College, New York, NY, USA., Krenitsky DM; Allergy, Immunology and Rheumatology Division, Department of Medicine, University of Rochester Medical Center, Rochester, NY, USA., Meednu N; Allergy, Immunology and Rheumatology Division, Department of Medicine, University of Rochester Medical Center, Rochester, NY, USA., Rangel-Moreno J; Allergy, Immunology and Rheumatology Division, Department of Medicine, University of Rochester Medical Center, Rochester, NY, USA., Scheel-Toellner D; Rheumatology Research Group, Institute for Inflammation and Ageing, University of Birmingham, NIHR Birmingham Biomedical Research Center and Clinical Research Facility, University of Birmingham, Queen Elizabeth Hospital, Birmingham, UK., Carr H; Rheumatology Research Group, Institute for Inflammation and Ageing, University of Birmingham, NIHR Birmingham Biomedical Research Center and Clinical Research Facility, University of Birmingham, Queen Elizabeth Hospital, Birmingham, UK., Nayar S; Rheumatology Research Group, Institute for Inflammation and Ageing, University of Birmingham, NIHR Birmingham Biomedical Research Center and Clinical Research Facility, University of Birmingham, Queen Elizabeth Hospital, Birmingham, UK., McMurray J; Rheumatology Research Group, Institute for Inflammation and Ageing, University of Birmingham, NIHR Birmingham Biomedical Research Center and Clinical Research Facility, University of Birmingham, Queen Elizabeth Hospital, Birmingham, UK., DiCarlo E; Department of Pathology and Laboratory Medicine, Hospital for Special Surgery, New York, NY, USA., Anolik JH; Allergy, Immunology and Rheumatology Division, Department of Medicine, University of Rochester Medical Center, Rochester, NY, USA.; Center for Musculoskeletal Research, University of Rochester Medical Center, Rochester, NY, USA., Donlin LT; Arthritis and Tissue Degeneration Program and Research Institute, Hospital for Special Surgery, New York, NY, USA., Orange DE; Arthritis and Tissue Degeneration Program and Research Institute, Hospital for Special Surgery, New York, NY, USA.; The Rockefeller University, New York, NY, USA., Kenney HM; Center for Musculoskeletal Research, University of Rochester Medical Center, Rochester, NY, USA., Schwarz EM; Center for Musculoskeletal Research, University of Rochester Medical Center, Rochester, NY, USA., Filer A; Rheumatology Research Group, Institute for Inflammation and Ageing, University of Birmingham, NIHR Birmingham Biomedical Research Center and Clinical Research Facility, University of Birmingham, Queen Elizabeth Hospital, Birmingham, UK., Ivashkiv LB; Arthritis and Tissue Degeneration Program and Research Institute, Hospital for Special Surgery, New York, NY, USA.; Weill Cornell Medical College, New York, NY, USA., Wang F; Department of Population Health Sciences, Weill Cornell Medical College, New York, NY, USA.

Publikováno v: Nature communications [Nat Commun] 2024 Aug 29; Vol. 15 (1), pp. 7503. Date of Electronic Publication: 2024 Aug 29.

kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species.

Autor: Mouratidis I; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA.; Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA., Baltoumas FA; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', Vari, 16672, Greece., Chantzi N; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA., Patsakis M; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA., Chan CSY; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA., Montgomery A; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA., Konnaris MA; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA.; Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA.; Department of Statistics, The Pennsylvania State University, University Park, PA, USA., Aplakidou E; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', Vari, 16672, Greece.; Department of Basic Sciences, School of Medicine, University of Crete, Heraklion, Greece., Georgakopoulos GC; National Technical University of Athens, School of Electrical and Computer Engineering, Athens, Greece., Das A; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA., Chartoumpekis DV; Service of Endocrinology, Diabetology and Metabolism, Lausanne University Hospital, Lausanne, Switzerland., Kovac J; Department of Food Science, The Pennsylvania State University, University Park, PA 16802, USA., Pavlopoulos GA; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', Vari, 16672, Greece.; Center for New Biotechnologies and Precision Medicine, School of Medicine, National and Kapodistrian University of Athens, Athens, 11527, Greece., Georgakopoulos-Soares I; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA, USA.

Publikováno v: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2024 Apr 21; Vol. 23, pp. 1919-1928. Date of Electronic Publication: 2024 Apr 21 (Print Publication: 2024).

Frequentmers - a novel way to look at metagenomic next generation sequencing data and an application in detecting liver cirrhosis.

Autor: Mouratidis I; Department of Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State College of Medicine, Hershey, PA, USA. ipm5219@psu.edu., Chantzi N; Department of Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State College of Medicine, Hershey, PA, USA., Khan U; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA., Konnaris MA; Department of Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State College of Medicine, Hershey, PA, USA.; Department of Statistics, Penn State, University Park, PA, USA.; Huck Institutes of the Life Sciences, Penn State, University Park, PA, USA., Chan CSY; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA., Mareboina M; Department of Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State College of Medicine, Hershey, PA, USA., Moeckel C; Department of Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State College of Medicine, Hershey, PA, USA., Georgakopoulos-Soares I; Department of Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State College of Medicine, Hershey, PA, USA. izg5139@psu.edu.

Publikováno v: BMC genomics [BMC Genomics] 2023 Dec 12; Vol. 24 (1), pp. 768. Date of Electronic Publication: 2023 Dec 12.

Patient-Perceived Outcomes Improve Faster Than Hip Strength in Recovery After Surgical Correction for Symptomatic Femoroacetabular Impingement.

Autor: Konnaris MA; Hospital for Special Surgery, New York, NY, USA., Junginger LM; Department of Orthopaedic Surgery, University of Michigan, Ann Arbor, MI, USA., Sibilsky Enselman ER; Department of Orthopaedic Surgery, University of Michigan, Ann Arbor, MI, USA., Bell RD; Hospital for Special Surgery, New York, NY, USA., Maerz T; Department of Orthopaedic Surgery, University of Michigan, Ann Arbor, MI, USA., Bedi A; Department of Orthopaedic Surgery, University of Michigan, Ann Arbor, MI, USA.

Publikováno v: HSS journal : the musculoskeletal journal of Hospital for Special Surgery [HSS J] 2023 Feb; Vol. 19 (1), pp. 97-106. Date of Electronic Publication: 2022 May 25.

Increased Comorbidity Burden Among Hip Fracture Patients During the COVID-19 Pandemic in New York City.

Autor: LeBrun DG; Department of Orthopaedic Surgery, Hospital for Special Surgery, New York, NY, USA., Konnaris MA; HSS Research Institute, Hospital for Special Surgery, New York, NY, USA., Ghahramani GC; HSS Research Institute, Hospital for Special Surgery, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA., Premkumar A; Department of Orthopaedic Surgery, Hospital for Special Surgery, New York, NY, USA., DeFrancesco CJ; Department of Orthopaedic Surgery, Hospital for Special Surgery, New York, NY, USA., Gruskay JA; Department of Orthopaedic Surgery, Hospital for Special Surgery, New York, NY, USA., Dvorzhinskiy A; Department of Orthopaedic Surgery, Hospital for Special Surgery, New York, NY, USA., Sandhu MS; Weill Cornell Medical College, New York, NY, USA., Goldwyn EM; Department of Orthopaedic Surgery, Orthopaedic Trauma Service, NewYork Presbyterian Queens, Flushing, NY, USA., Mendias CL; HSS Research Institute, Hospital for Special Surgery, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA., Ricci WM; Department of Orthopaedic Surgery, Orthopaedic Trauma Service, Hospital for Special Surgery, New York, NY, USA.

Publikováno v: Geriatric orthopaedic surgery & rehabilitation [Geriatr Orthop Surg Rehabil] 2021 Sep 11; Vol. 12, pp. 21514593211040611. Date of Electronic Publication: 2021 Sep 11 (Print Publication: 2021).