Defining distinct RNA-protein interactomes of SARS-CoV-2 genomic and subgenomic RNAs.

Autor: Whitworth IT; Department of Chemistry, University of Wisconsin-Madison College of Letters and Sciences, Madison, Wisconsin, 53706, United States., Knoener RA; Department of Chemistry, University of Wisconsin-Madison College of Letters and Sciences, Madison, Wisconsin, 53706, United States.; McArdle Laboratory for Cancer Research and Carbone Cancer Center, University of Wisconsin-Madison School of Medicine and Public Health, Madison, Wisconsin, 53705, United States.; Institute for Molecular Virology, University of Wisconsin-Madison Office of the Vice Chancellor for Research and Graduate Education, Madison, Wisconsin, 53706, United States., Puray-Chavez M; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, 63110, United States., Halfmann P; Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, Wisconsin, 53705, United States., Romero S; McArdle Laboratory for Cancer Research and Carbone Cancer Center, University of Wisconsin-Madison School of Medicine and Public Health, Madison, Wisconsin, 53705, United States.; Institute for Molecular Virology, University of Wisconsin-Madison Office of the Vice Chancellor for Research and Graduate Education, Madison, Wisconsin, 53706, United States., Baddouh M; McArdle Laboratory for Cancer Research and Carbone Cancer Center, University of Wisconsin-Madison School of Medicine and Public Health, Madison, Wisconsin, 53705, United States.; Institute for Molecular Virology, University of Wisconsin-Madison Office of the Vice Chancellor for Research and Graduate Education, Madison, Wisconsin, 53706, United States., Scalf M; Department of Chemistry, University of Wisconsin-Madison College of Letters and Sciences, Madison, Wisconsin, 53706, United States., Kawaoka Y; Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, Wisconsin, 53705, United States.; Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo 108-8639, Japan.; The Research Center for Global Viral Diseases, National Center for Global Health and Medicine Research Institute, Tokyo 162-8655, Japan.; Pandemic Preparedness, Infection and Advanced Research Center (UTOPIA), University of Tokyo, Tokyo 162-8655, Japan., Kutluay SB; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, 63110, United States., Smith LM; Department of Chemistry, University of Wisconsin-Madison College of Letters and Sciences, Madison, Wisconsin, 53706, United States., Sherer NM; McArdle Laboratory for Cancer Research and Carbone Cancer Center, University of Wisconsin-Madison School of Medicine and Public Health, Madison, Wisconsin, 53705, United States.; Institute for Molecular Virology, University of Wisconsin-Madison Office of the Vice Chancellor for Research and Graduate Education, Madison, Wisconsin, 53706, United States.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 May 16. Date of Electronic Publication: 2023 May 16.

Identifying Protein Interactomes of Target RNAs Using HyPR-MS.

Autor: Henke KB; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA., Miller RM; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA., Knoener RA; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA., Scalf M; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA., Spiniello M; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.; Immuno-Hematology and Transfusion Medicine, Cardarelli Hospital, Naples, Italy., Smith LM; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. smith@chem.wisc.edu.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2404, pp. 219-244.

Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.

Autor: Cesnik AJ; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Shortreed MR; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Schaffer LV; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Knoener RA; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Frey BL; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Scalf M; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Solntsev SK; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Dai Y; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Gasch AP; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States., Smith LM; Department of Chemistry, ‡Laboratory of Genetics, and §Genome Center of Wisconsin, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

Publikováno v: Journal of proteome research [J Proteome Res] 2018 Jan 05; Vol. 17 (1), pp. 568-578. Date of Electronic Publication: 2017 Dec 15.

Correction to "Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements".

Autor: Shortreed MR, Frey BL, Scalf M, Knoener RA, Cesnik AJ, Smith LM

Publikováno v: Journal of proteome research [J Proteome Res] 2017 Jul 07; Vol. 16 (7), pp. 2660. Date of Electronic Publication: 2017 Jun 13.