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The single-cell transcriptome program of nodule development cellular lineages in Medicago truncatula.

Autor: Pereira WJ; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Boyd J; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Conde D; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, 28223 Madrid, Spain., Triozzi PM; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA; PlantLab, Center of Plant Sciences, Sant'Anna School of Advanced Studies, 56010 Pisa, Italy., Balmant KM; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA; Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA., Dervinis C; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Schmidt HW; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Boaventura-Novaes C; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Chakraborty S; Department of Bacteriology, University of Wisconsin - Madison, Madison, WI 53706, USA., Knaack SA; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI 53715, USA., Gao Y; Department of Genetics & Biochemistry, Clemson University, Clemson, SC 29634, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Feltus FA; Department of Genetics & Biochemistry, Clemson University, Clemson, SC 29634, USA; Biomedical Data Science and Informatics Program, Clemson University, Clemson, SC, USA; Clemson Center for Human Genetics, Clemson University, Greenwood, SC 29646, USA., Roy S; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI 53715, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI 53726, USA; Department of Computer Sciences, University of Wisconsin, Madison, WI 53706, USA., Ané JM; Department of Bacteriology, University of Wisconsin - Madison, Madison, WI 53706, USA., Frugoli J; Department of Genetics & Biochemistry, Clemson University, Clemson, SC 29634, USA., Kirst M; School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA. Electronic address: mkirst@ufl.edu.

Publikováno v: Cell reports [Cell Rep] 2024 Feb 27; Vol. 43 (2), pp. 113747. Date of Electronic Publication: 2024 Feb 07.

Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus.

Autor: Conde D; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA.; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), Madrid 28223, Spain., Triozzi PM; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Pereira WJ; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Schmidt HW; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Balmant KM; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Knaack SA; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI 53715, USA., Redondo-López A; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), Madrid 28223, Spain., Roy S; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI 53715, USA.; Department of Computer Sciences, University of Wisconsin, Madison, WI 53792, USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI 53792, USA., Dervinis C; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA., Kirst M; School of Forest, Fisheries and Geomatics Sciences, University of Florida, Gainesville, FL 32611, USA.; Genetics Institute, University of Florida, Gainesville, FL 32611, USA.

Publikováno v: Development (Cambridge, England) [Development] 2022 Nov 01; Vol. 149 (21). Date of Electronic Publication: 2022 Oct 17.

Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies.

Autor: Koch C; Department of Computer Sciences, University of Wisconsin-Madison, Madison, WI 53706, USA., Konieczka J; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Delorey T; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Lyons A; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA., Socha A; Dartmouth College, Biology Department, Hanover, NH 03755, USA., Davis K; Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA., Knaack SA; Wisconsin Institute for Discovery, 330 North Orchard Street, Madison, WI 53715, USA., Thompson D; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., O'Shea EK; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA; Howard Hughes Medical Institute, Harvard University, Northwest Laboratory, Cambridge, MA 02138, USA; Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Northwest Laboratory, Cambridge, MA 02138, USA; Department of Molecular and Cellular Biology, Harvard University, Northwest Laboratory, Cambridge, MA 02138, USA., Regev A; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA., Roy S; Wisconsin Institute for Discovery, 330 North Orchard Street, Madison, WI 53715, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53792, USA. Electronic address: sroy@biostat.wisc.edu.

Publikováno v: Cell systems [Cell Syst] 2017 May 24; Vol. 4 (5), pp. 543-558.e8.

A pan-cancer modular regulatory network analysis to identify common and cancer-specific network components.

Autor: Knaack SA; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, USA., Siahpirani AF; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, USA. ; Department of Computer Sciences, University of Wisconsin, Madison, WI, USA., Roy S; Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, USA. ; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA.

Publikováno v: Cancer informatics [Cancer Inform] 2014 Oct 28; Vol. 13 (Suppl 5), pp. 69-84. Date of Electronic Publication: 2014 Oct 28 (Print Publication: 2014).