Zobrazeno 1 - 10
of 158
pro vyhledávání: '"Kirsten S Hofmockel"'
Publikováno v:
PLoS ONE, Vol 12, Iss 7, p e0180596 (2017)
Soil microbial communities are structured by biogeochemical processes that occur at many different spatial scales, which makes soil sampling difficult. Because soil microbial communities are important in nutrient cycling and soil fertility, it is imp
Externí odkaz:
https://doaj.org/article/2ca676c6c48c46a18aa43254dc08775c
Publikováno v:
PLoS ONE, Vol 11, Iss 11, p e0166578 (2016)
Despite the central role of soil microbial communities in global carbon (C) cycling, little is known about soil microbial community structure and even less about their metabolic pathways. Efforts to characterize soil communities often focus on identi
Externí odkaz:
https://doaj.org/article/4b35329898234a1a8aa2690037f1b9a2
Publikováno v:
PLoS ONE, Vol 10, Iss 7, p e0134345 (2015)
Plant and soil properties cooperatively structure soil microbial communities, with implications for ecosystem functioning. However, the extent to which each factor contributes to community structuring is not fully understood. To quantify the influenc
Externí odkaz:
https://doaj.org/article/27bc7dcc39b046c18a6888d7780846f5
Publikováno v:
mSystems, Vol 9, Iss 8 (2024)
ABSTRACT Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from bulk metatranscriptomes sequenced from gras
Externí odkaz:
https://doaj.org/article/c0417b7fa48146b3bdf17bf65e39f357
Autor:
Lydia R O'Halloran, Elizabeth T Borer, Eric W Seabloom, Andrew S MacDougall, Elsa E Cleland, Rebecca L McCulley, Sarah Hobbie, W Stan Harpole, Nicole M DeCrappeo, Chengjin Chu, Jonathan D Bakker, Kendi F Davies, Guozhen Du, Jennifer Firn, Nicole Hagenah, Kirsten S Hofmockel, Johannes M H Knops, Wei Li, Brett A Melbourne, John W Morgan, John L Orrock, Suzanne M Prober, Carly J Stevens
Publikováno v:
PLoS ONE, Vol 8, Iss 2, p e54988 (2013)
Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decompositi
Externí odkaz:
https://doaj.org/article/7514238d70634171875aed14bee597d0
Autor:
Ruonan Wu, Michelle R. Davison, William C. Nelson, Montana L. Smith, Mary S. Lipton, Janet K. Jansson, Ryan S. McClure, Jason E. McDermott, Kirsten S. Hofmockel
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)
Abstract Bacteriophages are abundant in soils. However, the majority are uncharacterized, and their hosts are unknown. Here, we apply high-throughput chromosome conformation capture (Hi–C) to directly capture phage-host relationships. Some hosts ha
Externí odkaz:
https://doaj.org/article/4f68eead6b6e40d5a31c3db43382e34e
Autor:
Katherine I. Naasko, Daniel Naylor, Emily B. Graham, Sneha P. Couvillion, Robert Danczak, Nikola Tolic, Carrie Nicora, Steven Fransen, Haiying Tao, Kirsten S. Hofmockel, Janet K. Jansson
Publikováno v:
mBio, Vol 14, Iss 5 (2023)
ABSTRACT Climate change is causing an increase in drought in many soil ecosystems and a loss of soil organic carbon. Calcareous soils may partially mitigate these losses via carbon capture and storage. Here, we aimed to determine how irrigation-suppl
Externí odkaz:
https://doaj.org/article/fa0bf507cf1b4aa68a730bb6059ea221
Autor:
Sneha P. Couvillion, Robert E. Danczak, Dan Naylor, Montana L. Smith, Kelly G. Stratton, Vanessa L. Paurus, Kent J. Bloodsworth, Yuliya Farris, Darren J. Schmidt, Rachel E. Richardson, Lisa M. Bramer, Sarah J. Fansler, Ernesto S. Nakayasu, Jason E. McDermott, Thomas O. Metz, Mary S. Lipton, Janet K. Jansson, Kirsten S. Hofmockel
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-20 (2023)
Abstract Background Microbiomes contribute to multiple ecosystem services by transforming organic matter in the soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact the microbial metabolism of organic ma
Externí odkaz:
https://doaj.org/article/911829cd983242c7847f34849a073ec4
Autor:
Ruonan Wu, Clyde A. Smith, Garry W. Buchko, Ian K. Blaby, David Paez-Espino, Nikos C. Kyrpides, Yasuo Yoshikuni, Jason E. McDermott, Kirsten S. Hofmockel, John R. Cort, Janet K. Jansson
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-14 (2022)
Metagenomics is revealing auxiliary metabolic genes (AMGs) in soil viral genomes. Here, authors solve the crystal structure for a soil viral AMG product, free and ligand bound, and show the protein can decompose chitin, a common carbon polymer.
Externí odkaz:
https://doaj.org/article/8096e82d3dc740d8a095035cfffc6df7
Autor:
Montana L. Smith, Karl K. Weitz, Allison M. Thompson, Janet K. Jansson, Kirsten S. Hofmockel, Mary S. Lipton
Publikováno v:
Microorganisms, Vol 11, Iss 11, p 2630 (2023)
Microbial response to changing environmental factors influences the fate of soil organic carbon, and drought has been shown to affect microbial metabolism and respiration. We hypothesized that the access of microbes to different carbon pools in respo
Externí odkaz:
https://doaj.org/article/eb15feada43943488bdcedbfddf0bc78