Outcome-guided spike-and-slab Lasso Biclustering: A Novel Approach for Enhancing Biclustering Techniques for Gene Expression Analysis

Autor: Vargas-Mieles, Luis A., Kirk, Paul D. W., Wallace, Chris

Biclustering has gained interest in gene expression data analysis due to its ability to identify groups of samples that exhibit similar behaviour in specific subsets of genes (or vice versa), in contrast to traditional clustering methods that classif

Externí odkaz: http://arxiv.org/abs/2412.08416

First search for atmospheric millicharged particles with the LUX-ZEPLIN experiment

Autor: Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Bargemann, J. W., Barillier, E. E., Bauer, D., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chin, Y. T., Chott, N. I., Converse, M. V., Coronel, R., Cottle, A., Cox, G., Curran, D., Dahl, C. E., Darlington, I., Dave, S., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Di Felice, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Dubey, S., Eriksen, S. R., Fan, A., Fayer, S., Fearon, N. M., Fieldhouse, N., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Ghosh, A., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Haiston, J. J., Hall, C. R., Hall, T. J., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., K., Meghna K., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kim, Y. D., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Lawes, C., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Lippincott, W. H., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., McLaughlin, J. B., McMonigle, R., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., O'Brien, C. L., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Oyulmaz, K. Y, Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Richards, A., Riffard, Q., Rischbieter, G. R. C., Ritchey, E., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Sehr, G., Shafer, B., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Usón, A., Vacheret, A., Vaitkus, A. C., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Weeldreyer, L., Whitis, T. J., Wild, K., Williams, M., Wisniewski, W. J., Wolf, L., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xu, J., Xu, Y., Yeh, M., Yeum, D., Zha, W., Zweig, E. A.

We report on a search for millicharged particles (mCPs) produced in cosmic ray proton atmospheric interactions using data collected during the first science run of the LUX-ZEPLIN experiment. The mCPs produced by two processes -- meson decay and proto

Externí odkaz: http://arxiv.org/abs/2412.04854

Annealed variational mixtures for disease subtyping and biomarker discovery

Autor: Prevot, Emma, Toogood, Rory, Pagani, Filippo, Kirk, Paul D. W.

Cluster analyses of high-dimensional data are often hampered by the presence of large numbers of variables that do not provide relevant information, as well as the perennial issue of choosing an appropriate number of clusters. These challenges are fr

Externí odkaz: http://arxiv.org/abs/2411.19262

Leveraging LLMs for Legacy Code Modernization: Challenges and Opportunities for LLM-Generated Documentation

Autor: Diggs, Colin, Doyle, Michael, Madan, Amit, Scott, Siggy, Escamilla, Emily, Zimmer, Jacob, Nekoo, Naveed, Ursino, Paul, Bartholf, Michael, Robin, Zachary, Patel, Anand, Glasz, Chris, Macke, William, Kirk, Paul, Phillips, Jasper, Sridharan, Arun, Wendt, Doug, Rosen, Scott, Naik, Nitin, Brunelle, Justin F., Thaker, Samruddhi

Legacy software systems, written in outdated languages like MUMPS and mainframe assembly, pose challenges in efficiency, maintenance, staffing, and security. While LLMs offer promise for modernizing these systems, their ability to understand legacy l

Externí odkaz: http://arxiv.org/abs/2411.14971

LLM-IE: A Python Package for Generative Information Extraction with Large Language Models

Autor: Hsu, Enshuo, Roberts, Kirk

Objectives: Despite the recent adoption of large language models (LLMs) for biomedical information extraction, challenges in prompt engineering and algorithms persist, with no dedicated software available. To address this, we developed LLM-IE: a Pyth

Externí odkaz: http://arxiv.org/abs/2411.11779