Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Kiran Javkar"'
Autor:
Seth Commichaux, Hugh Rand, Kiran Javkar, Erin K. Molloy, James B. Pettengill, Arthur Pightling, Maria Hoffmann, Mihai Pop, Victor Jayeola, Steven Foley, Yan Luo
Publikováno v:
BMC Genomics, Vol 24, Iss 1, Pp 1-18 (2023)
Abstract Background The Salmonella enterica serovar Newport red onion outbreak of 2020 was the largest foodborne outbreak of Salmonella in over a decade. The epidemiological investigation suggested two farms as the likely source of contamination. How
Externí odkaz:
https://doaj.org/article/ca72768b89244be3bfd51dc49a272706
Autor:
Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand, Yi Chen, Elizabeth Reed, Narjol Gonzalez-Escalona, Errol Strain, Hugh Rand, Mihai Pop, Andrea Ottesen
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)
Abstract Background Whole genome sequencing of cultured pathogens is the state of the art public health response for the bioinformatic source tracking of illness outbreaks. Quasimetagenomics can substantially reduce the amount of culturing needed bef
Externí odkaz:
https://doaj.org/article/5f6f85a22255402194931f23989f488c
Autor:
Kiran Javkar, Hugh Rand, Maria Hoffmann, Yan Luo, Saul Sarria, Nagarajan Thirunavukkarasu, Christine A. Pillai, Patrick McGann, J. Kristie Johnson, Errol Strain, Mihai Pop
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Carbapenems—one of the important last-line antibiotics for the treatment of gram-negative infections—are becoming ineffective for treating Acinetobacter baumannii infections. Studies have identified multiple genes (and mechanisms) responsible for
Externí odkaz:
https://doaj.org/article/21c09e74e17e4975bf6b02b54b7d2817
Autor:
Jay Noboru Worley, Kiran Javkar, Maria Hoffmann, Kristen Hysell, Amanda Garcia-Williams, Kaitlin Tagg, Sanjat Kanjilal, Errol Strain, Mihai Pop, Marc Allard, Louise Francois Watkins, Lynn Bry
Publikováno v:
mBio, Vol 12, Iss 1 (2021)
Multidrug-resistant Shigella
Externí odkaz:
https://doaj.org/article/10e15b736114483fb498b741dd48a368
Autor:
Jacquelyn S. Meisel, Daniel J. Nasko, Brian Brubach, Victoria Cepeda-Espinoza, Jessica Chopyk, Héctor Corrada-Bravo, Marcus Fedarko, Jay Ghurye, Kiran Javkar, Nathan D. Olson, Nidhi Shah, Sarah M. Allard, Adam L. Bazinet, Nicholas H. Bergman, Alexis Brown, J. Gregory Caporaso, Sean Conlan, Jocelyne DiRuggiero, Samuel P. Forry, Nur A. Hasan, Jason Kralj, Paul M. Luethy, Donald K. Milton, Brian D. Ondov, Sarah Preheim, Shashikala Ratnayake, Stephanie M. Rogers, M. J. Rosovitz, Eric G. Sakowski, Nils Oliver Schliebs, Daniel D. Sommer, Krista L. Ternus, Gherman Uritskiy, Sean X. Zhang, Mihai Pop, Todd J. Treangen
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-10 (2018)
Abstract The Mid-Atlantic Microbiome Meet-up (M3) organization brings together academic, government, and industry groups to share ideas and develop best practices for microbiome research. In January of 2018, M3 held its fourth meeting, which focused
Externí odkaz:
https://doaj.org/article/66ee37ad2f6c4a809bc6dd46faa314ac
Autor:
Joan Martí-Carreras, Alejandro Rafael Gener, Sierra D. Miller, Anderson F. Brito, Christiam E. Camacho, Ryan Connor, Ward Deboutte, Cody Glickman, David M. Kristensen, Wynn K. Meyer, Sejal Modha, Alexis L. Norris, Surya Saha, Anna K. Belford, Evan Biederstedt, James Rodney Brister, Jan P. Buchmann, Nicholas P. Cooley, Robert A. Edwards, Kiran Javkar, Michael Muchow, Harihara Subrahmaniam Muralidharan, Charles Pepe-Ranney, Nidhi Shah, Migun Shakya, Michael J. Tisza, Benjamin J. Tully, Bert Vanmechelen, Valerie C. Virta, JL Weissman, Vadim Zalunin, Alexandre Efremov, Ben Busby
Publikováno v:
Viruses, Vol 12, Iss 12, p 1424 (2020)
Viruses represent important test cases for data federation due to their genome size and the rapid increase in sequence data in publicly available databases. However, some consequences of previously decentralized (unfederated) data are lack of consens
Externí odkaz:
https://doaj.org/article/45441b170084430eaf943eb545346079
Publikováno v:
Bioinformatics. 39
MotivationScientists seeking to understand the genomic basis of bacterial phenotypes, such as antibiotic resistance, today have access to an unprecedented number of complete and nearly complete genomes. Making sense of these data requires computation
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::430c1759833da7576ac6c24bd3704164
https://doi.org/10.1093/bioinformatics/btac844
https://doi.org/10.1093/bioinformatics/btac844
Autor:
Seth Commichaux, Kiran Javkar, Harihara Subrahmaniam Muralidharan, Padmini Ramachandran, Andrea Ottesen, Hugh Rand, Mihai Pop
BackgroundMicrobial eukaryotes are nearly ubiquitous in microbiomes on Earth and contribute to many integral ecological functions. Metagenomics is a proven tool for studying the microbial diversity, functions, and ecology of microbiomes, but has been
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53b360cf8b6f3bdc535e30b007735e34
https://doi.org/10.21203/rs.3.rs-1186624/v3
https://doi.org/10.21203/rs.3.rs-1186624/v3
Publikováno v:
Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies. 3:1-26
Many mobile applications such as Strava or Mapmyride allow cyclists to collect detailed GPS traces of their trips for health or route sharing purposes. However, cycling GPS traces also have a lot of potential from an urban planning perspective. In th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2703716ce966e28741075608461a571b
https://doi.org/10.1145/3314407
https://doi.org/10.1145/3314407
Autor:
Sanjat Kanjilal, Marc W. Allard, Kiran Javkar, Lynn Bry, Jay N. Worley, Maria Hoffmann, Mihai Pop, Kaitlin A. Tagg, Louise Francois Watkins, Amanda G. Garcia-Williams, Errol Strain, Kristen Hysell
Publikováno v:
mBio, Vol 12, Iss 1 (2021)
Multidrug-resistant (MDR) Shigella infections have been identified globally among men who have sex with men (MSM). The highly drug-resistant phenotype often confounds initial antimicrobial therapy, placing patients at risk for adverse outcomes, the d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3768afc68927112aeaf4eb81c7516c79
https://doi.org/10.1128/mbio.03188-20
https://doi.org/10.1128/mbio.03188-20