Zobrazeno 1 - 10
of 177
pro vyhledávání: '"Kinjo Akira R"'
With the membership function being strictly positive, the conventional fuzzy c-means clustering method sometimes causes imbalanced influence when clusters of vastly different sizes exist. That is, an outstandingly large cluster drags to its center al
Externí odkaz:
http://arxiv.org/abs/2303.14366
Autor:
Ng, Eden Tian Hwa, Kinjo, Akira R.
Publikováno v:
Biophysical Reviews, volume 14, pages 1359-1367 (2022)
Plasticity-led evolution is a form of evolution where a change in the environment induces novel traits via phenotypic plasticity, after which the novel traits are genetically accommodated over generations under the novel environment. This mode of evo
Externí odkaz:
http://arxiv.org/abs/2208.00649
Publikováno v:
BMC Genomics, Vol 12, Iss Suppl 3, p S21 (2011)
Abstract Background Many viruses contain genes that originate from their hosts. Some of these acquired genes give viruses the ability to interfere with host immune responses by various mechanisms. Genes of host origin that appear commonly in viruses
Externí odkaz:
https://doaj.org/article/508717dc28b54bbba7f6bda7da9070a4
Autor:
Katayama Toshiaki, Wilkinson Mark D, Vos Rutger, Kawashima Takeshi, Kawashima Shuichi, Nakao Mitsuteru, Yamamoto Yasunori, Chun Hong-Woo, Yamaguchi Atsuko, Kawano Shin, Aerts Jan, Aoki-Kinoshita Kiyoko F, Arakawa Kazuharu, Aranda Bruno, Bonnal Raoul JP, Fernández José M, Fujisawa Takatomo, Gordon Paul MK, Goto Naohisa, Haider Syed, Harris Todd, Hatakeyama Takashi, Ho Isaac, Itoh Masumi, Kasprzyk Arek, Kido Nobuhiro, Kim Young-Joo, Kinjo Akira R, Konishi Fumikazu, Kovarskaya Yulia, von Kuster Greg, Labarga Alberto, Limviphuvadh Vachiranee, McCarthy Luke, Nakamura Yasukazu, Nam Yunsun, Nishida Kozo, Nishimura Kunihiro, Nishizawa Tatsuya, Ogishima Soichi, Oinn Tom, Okamoto Shinobu, Okuda Shujiro, Ono Keiichiro, Oshita Kazuki, Park Keun-Joon, Putnam Nicholas, Senger Martin, Severin Jessica, Shigemoto Yasumasa, Sugawara Hideaki, Taylor James, Trelles Oswaldo, Yamasaki Chisato, Yamashita Riu, Satoh Noriyuki, Takagi Toshihisa
Publikováno v:
Journal of Biomedical Semantics, Vol 2, Iss 1, p 4 (2011)
Abstract Background The interaction between biological researchers and the bioinformatics tools they use is still hampered by incomplete interoperability between such tools. To ensure interoperability initiatives are effectively deployed, end-user ap
Externí odkaz:
https://doaj.org/article/8f85f5d5606446c2bc750ba1ffb531d8
Autor:
Katayama Toshiaki, Arakawa Kazuharu, Nakao Mitsuteru, Ono Keiichiro, Aoki-Kinoshita Kiyoko F, Yamamoto Yasunori, Yamaguchi Atsuko, Kawashima Shuichi, Chun Hong-Woo, Aerts Jan, Aranda Bruno, Barboza Lord, Bonnal Raoul JP, Bruskiewich Richard, Bryne Jan C, Fernández José M, Funahashi Akira, Gordon Paul MK, Goto Naohisa, Groscurth Andreas, Gutteridge Alex, Holland Richard, Kano Yoshinobu, Kawas Edward A, Kerhornou Arnaud, Kibukawa Eri, Kinjo Akira R, Kuhn Michael, Lapp Hilmar, Lehvaslaiho Heikki, Nakamura Hiroyuki, Nakamura Yasukazu, Nishizawa Tatsuya, Nobata Chikashi, Noguchi Tamotsu, Oinn Thomas M, Okamoto Shinobu, Owen Stuart, Pafilis Evangelos, Pocock Matthew, Prins Pjotr, Ranzinger René, Reisinger Florian, Salwinski Lukasz, Schreiber Mark, Senger Martin, Shigemoto Yasumasa, Standley Daron M, Sugawara Hideaki, Tashiro Toshiyuki, Trelles Oswaldo, Vos Rutger A, Wilkinson Mark D, York William, Zmasek Christian M, Asai Kiyoshi, Takagi Toshihisa
Publikováno v:
Journal of Biomedical Semantics, Vol 1, Iss 1, p 8 (2010)
Abstract Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer ent
Externí odkaz:
https://doaj.org/article/daa32dc8e338496886d3efaa44124737
Autor:
Kinjo Akira R, Nishikawa Ken
Publikováno v:
BMC Bioinformatics, Vol 7, Iss 1, p 401 (2006)
Abstract Background One-dimensional protein structures such as secondary structures or contact numbers are useful for three-dimensional structure prediction and helpful for intuitive understanding of the sequence-structure relationship. Accurate pred
Externí odkaz:
https://doaj.org/article/b218dfc5195e4b68ba435109c240f059
Autor:
Ng, Eden Tian Hwa1 (AUTHOR), Kinjo, Akira R.1 (AUTHOR) akira.kinjo@ubd.edu.bn
Publikováno v:
Scientific Reports. 11/14/2023, Vol. 13 Issue 1, p1-18. 18p.
Autor:
Kinjo, Akira R.
Publikováno v:
Journal of Theoretical Biology 443:18-27 (2018)
In the protein sequence space, natural proteins form clusters of families which are characterized by their unique native folds whereas the great majority of random polypeptides are neither clustered nor foldable to unique structures. Since a given po
Externí odkaz:
http://arxiv.org/abs/1708.07612
Autor:
Kinjo, Akira R.
Publikováno v:
Biophysics and Physicobiology, Vol. 14, pp. 99-110 (2017)
A grand canonical Monte Carlo (MC) algorithm is presented for studying the lattice gas model (LGM) of multiple protein sequence alignment, which coherently combines long-range interactions and variable-length insertions. MC simulations are used for b
Externí odkaz:
http://arxiv.org/abs/1705.10438
Autor:
Nishikawa, Ken, Kinjo, Akira R.
Publikováno v:
Biophysical Reviews Vol. 9, pp. 73-77 (2017)
The epigenome, i.e. the whole of chromatin modifications, is transferred from mother to daughter cells during cell differentiation. When de novo chromatin modifications (establishment or erasure of, respectively, new or pre-existing DNA methylations
Externí odkaz:
http://arxiv.org/abs/1703.02667