A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome

Autor: Rasika Ann Mathias, Margaret A. Taub, Christopher R. Gignoux, Wenqing Fu, Shaila Musharoff, Timothy D. O'Connor, Candelaria Vergara, Dara G. Torgerson, Maria Pino-Yanes, Suyash S. Shringarpure, Lili Huang, Nicholas Rafaels, Meher Preethi Boorgula, Henry Richard Johnston, Victor E. Ortega, Albert M. Levin, Wei Song, Raul Torres, Badri Padhukasahasram, Celeste Eng, Delmy-Aracely Mejia-Mejia, Trevor Ferguson, Zhaohui S. Qin, Alan F. Scott, Maria Yazdanbakhsh, James G. Wilson, Javier Marrugo, Leslie A. Lange, Rajesh Kumar, Pedro C. Avila, L. Keoki Williams, Harold Watson, Lorraine B. Ware, Christopher Olopade, Olufunmilayo Olopade, Ricardo Oliveira, Carole Ober, Dan L. Nicolae, Deborah Meyers, Alvaro Mayorga, Jennifer Knight-Madden, Tina Hartert, Nadia N. Hansel, Marilyn G. Foreman, Jean G. Ford, Mezbah U. Faruque, Georgia M. Dunston, Luis Caraballo, Esteban G. Burchard, Eugene Bleecker, Maria Ilma Araujo, Edwin Francisco Herrera-Paz, Kimberly Gietzen, Wendy E. Grus, Michael Bamshad, Carlos D. Bustamante, Eimear E. Kenny, Ryan D. Hernandez, Terri H. Beaty, Ingo Ruczinski, Joshua Akey, CAAPA, Kathleen C. Barnes

Publikováno v: Nature Communications, Vol 7, Iss 1, Pp 1-10 (2016)

The Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) aims to better understand population genetics of the African diaspora. Here, it uses deeply sequenced whole-genomes to describe the impact of admixture and potential

Externí odkaz: https://doaj.org/article/5900ff2f826d4d3b88e21eee23d8e158

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

Autor: Omid Bakhtar, Jay Antico, Brendan B. Larsen, Catelyn Anderson, Louise C. Laurent, Brett Austin, Nicole L. Washington, Simon R. White, Kelly M. Schiabor Barrett, Geraint Levan, Kristian G. Andersen, Eileen de Feo, Phoebe Seaver, Magnus Isaksson, Xianding Deng, Sharoni Jacobs, William E. Lee, Ezra Kurzban, Peter De Hoff, Candace Wang, Emily Spencer, Venice Servellita, Phil Febbo, Michael Worobey, Shashank Sathe, Kelly Hoon, Brad Sickler, David T.W. Wong, Jimmy M. Ramirez, Gene W. Yeo, Karthik Gangavarapu, Kimberly Gietzen, Jingtao Liu, Xueqing Wang, Efren Sandoval, Aaron Harding, Holly Valentine, Eric McDonald, Marc A. Suchard, Mark Zeller, Charlotte Rivera-Garcia, Charles Y. Chiu, Elizabeth T. Cirulli, David M. Becker, Marc Laurent, James T. Lu, Refugio Robles-Sikisaka, Jason Nguyen, Tracy Basler, Rob Knight, Alexandre Bolze, Tyler Cassens, Laura D. Hughes

Publikováno v: medRxiv
medRxiv, vol 2, iss 02-09

Author(s): Washington, Nicole L; Gangavarapu, Karthik; Zeller, Mark; Bolze, Alexandre; Cirulli, Elizabeth T; Schiabor Barrett, Kelly M; Larsen, Brendan B; Anderson, Catelyn; White, Simon; Cassens, Tyler; Jacobs, Sharoni; Levan, Geraint; Nguyen, Jason

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::979a6fd0cdd912a3c4aa1230a3806b88
https://pubmed.ncbi.nlm.nih.gov/33861950

Genome-wide association study of asthma in individuals of African ancestry reveals novel asthma susceptibility loci

Autor: Michelle Daya, Nicholas Rafaels, Sameer Chavan, Henry Richard Johnston, Aniket Shetty, Christopher R. Gignoux, Meher Preethi Boorgula, Monica Campbell, Pissamai Maul, Trevor Maul, Candelaria Vergara, Albert M. Levin, Genevieve Wojcik, Dara G. Torgerson, Victor E. Ortega, Ayo Doumatey, Maria Ilma Araujo, Pedro C. Avila, Eugene Bleecker, Carlos Bustamante, Luis Caraballo, Georgia M. Dunston, Mezbah U. Faruque, Trevor S. Ferguson, Camila Figueiredo, Jean G. Ford, Pierre-Antoine Gourraud, Nadia N. Hansel, Ryan D. Hernandez, Edwin Francisco Herrera-Paz, Eimear E. Kenny, Jennifer Knight-Madden, Rajesh Kumar, Lesli A. Lange, Ethan M. Lange, Antoine Lizee, Alvaro Mayorga, Deborah Meyers, Dan L. Nicolae, Timothy D. O’Connor, Ricardo Riccio Oliveira, Christopher O. Olopade, Olufunmilayo Olopade, Zhaohui S. Qin, Charles Rotimi, Harold Watson, Rainford J. Wilks, L. Keoki Williams, James G. Wilson, Carole Ober, Esteban G. Burchard, Terri H. Beaty, Margaret A. Taub, Ingo Ruczinski, Rasika Ann Mathias, Kathleen C. Barnes, Ayola Akim Adegnika, Ganiyu Arinola, Ulysse Ateba-Ngoa, Gerardo Ayestas, Adolfo Correa, Francisco M. De La Vega, Celeste Eng, Said Omar Leiva Erazo, Marilyn G. Foreman, Cassandra Foster, Li Gao, Jingjing Gao, Kimberly Gietzen, Leslie Grammer, Linda Gutierrez, Mark Hansen, Tina Hartert, Yijuan Hu, Kwang-Youn A. Kim, Pamela Landaverde-Torres, Javier Marrugo, Beatriz Martinez, Rosella Martinez, Luis F. Mayorga, Delmy-Aracely Mejia-Mejia, Catherine Meza, Solomon Musani, Shaila Musharoff, Oluwafemi Oluwole, Maria Pino-Yanes, Hector Ramos, Allan Saenz, Steven Salzberg, Maureen Samms-Vaughan, Robert Schleimer, Alan F. Scott, Suyash S. Shringarpure, Wei Song, Zachary A. Szpiech, Raul Torres, Gloria Varela, Olga Marina Vasquez, Lorraine B. Ware, Maria Yazdanbakhsh

BACKGROUNDAsthma is a complex disease with striking disparities across racial and ethnic groups, which may be partly attributable to genetic factors. One of the main goals of the Consortium on Asthma among African-ancestry Populations in the Americas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c14897a0609523fa7875267bbcf2a16

Design of a Bovine Low-Density SNP Array Optimized for Imputation

Autor: Tad S. Sonstegard, Curtis P. Van Tassell, Sébastien Fritz, Didier Boichard, G.R. Wiggans, Xavier David, Cindy Lawley, André Eggen, Ben J. Hayes, Karine A. Viaud-Martinez, Paul M. VanRaden, Kimberly Gietzen, Hoyoung Chung, Romain Dassonneville

Publikováno v: PLoS ONE
PLoS ONE, Public Library of Science, 2012, 7, online (3), Non paginé. ⟨10.1371/journal.pone.0034130⟩
PLoS ONE, Vol 7, Iss 3, p e34130 (2012)
Plos One 3 (7, online), Non paginé. (2012)

Chantier qualité GA; The Illumina BovineLD BeadChip was designed to support imputation to higher density genotypes in dairy and beef breeds by including single-nucleotide polymorphisms (SNPs) that had a high minor allele frequency as well as uniform

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4494dbfe8f8835c8b99940dbf535006
https://doi.org/10.1371/journal.pone.0034130

SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep.

Autor: Heaton, Michael P.¹ mike.heaton@ars.usda.gov, Leymaster, Kreg A.¹, Kalbfleisch, Theodore S.², Kijas, James W.³, Clarke, Shannon M.⁴, McEwan, John⁴, Maddox, Jillian F.⁵, Basnayake, Veronica⁶, Petrik, Dustin T.⁶, Simpson, Barry⁶, Smith, Timothy P. L.¹, Chitko-McKown, Carol G.¹

Publikováno v: PLoS ONE. Apr2014, Vol. 9 Issue 4, p1-10. 10p.