Zobrazeno 1 - 10
of 91
pro vyhledávání: '"Kim D Pruitt"'
Autor:
Sanjida H Rangwala, Dmitry V Rudnev, Victor V Ananiev, Dong-Ha Oh, Andrea Asztalos, Barrett Benica, Evgeny A Borodin, Nathan Bouk, Vladislav I Evgeniev, Vamsi K Kodali, Vadim Lotov, Eyal Mozes, Marina V Omelchenko, Sofya Savkina, Ekaterina Sukharnikov, Joël Virothaisakun, Terence D Murphy, Kim D Pruitt, Valerie A Schneider
Publikováno v:
PLoS Biology, Vol 22, Iss 5, p e3002405 (2024)
We report a new visualization tool for analysis of whole-genome assembly-assembly alignments, the Comparative Genome Viewer (CGV) (https://ncbi.nlm.nih.gov/genome/cgv/). CGV visualizes pairwise same-species and cross-species alignments provided by Na
Externí odkaz:
https://doaj.org/article/5f3ee861c1894e2e9be54c30e3c86d5c
Autor:
Pierre Balmer, Anina Bauer, Shashikant Pujar, Kelly M McGarvey, Monika Welle, Arnaud Galichet, Eliane J Müller, Kim D Pruitt, Tosso Leeb, Vidhya Jagannathan
Publikováno v:
PLoS ONE, Vol 12, Iss 8, p e0180359 (2017)
Keratins represent a large protein family with essential structural and functional roles in epithelial cells of skin, hair follicles, and other organs. During evolution the genes encoding keratins have undergone multiple rounds of duplication and hum
Externí odkaz:
https://doaj.org/article/fbd6ad78bc464dc290ccb474f76ff090
Autor:
Wesley C. Warren, LaDeana W. Hillier, Chad Tomlinson, Patrick Minx, Milinn Kremitzki, Tina Graves, Chris Markovic, Nathan Bouk, Kim D. Pruitt, Francoise Thibaud-Nissen, Valerie Schneider, Tamer A. Mansour, C. Titus Brown, Aleksey Zimin, Rachel Hawken, Mitch Abrahamsen, Alexis B. Pyrkosz, Mireille Morisson, Valerie Fillon, Alain Vignal, William Chow, Kerstin Howe, Janet E. Fulton, Marcia M. Miller, Peter Lovell, Claudio V. Mello, Morgan Wirthlin, Andrew S. Mason, Richard Kuo, David W. Burt, Jerry B. Dodgson, Hans H. Cheng
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 7, Iss 1, Pp 109-117 (2017)
The importance of the Gallus gallus (chicken) as a model organism and agricultural animal merits a continuation of sequence assembly improvement efforts. We present a new version of the chicken genome assembly (Gallus_gallus-5.0; GCA_000002315.3), bu
Externí odkaz:
https://doaj.org/article/707c7ed927fe4217bfe9c7aa6879408b
Autor:
Joannella Morales, Shashikant Pujar, Jane E. Loveland, Alex Astashyn, Ruth Bennett, Andrew Berry, Eric Cox, Claire Davidson, Olga Ermolaeva, Catherine M. Farrell, Reham Fatima, Laurent Gil, Tamara Goldfarb, Jose M. Gonzalez, Diana Haddad, Matthew Hardy, Toby Hunt, John Jackson, Vinita S. Joardar, Michael Kay, Vamsi K. Kodali, Kelly M. McGarvey, Aoife McMahon, Jonathan M. Mudge, Daniel N. Murphy, Michael R. Murphy, Bhanu Rajput, Sanjida H. Rangwala, Lillian D. Riddick, Françoise Thibaud-Nissen, Glen Threadgold, Anjana R. Vatsan, Craig Wallin, David Webb, Paul Flicek, Ewan Birney, Kim D. Pruitt, Adam Frankish, Fiona Cunningham, Terence D. Murphy
Publikováno v:
Nature. 604:310-315
Comprehensive genome annotation is essential to understand the impact of clinically relevant variants. However, the absence of a standard for clinical reporting and browser display complicates the process of consistent interpretation and reporting. T
Autor:
Catherine M. Farrell, Tamara Goldfarb, Sanjida H. Rangwala, Alexander Astashyn, Olga D. Ermolaeva, Vichet Hem, Kenneth S. Katz, Vamsi K. Kodali, Frank Ludwig, Craig L. Wallin, Kim D. Pruitt, Terence D. Murphy
Publikováno v:
Genome Research. 32:175-188
Eukaryotic genomes contain many nongenic elements that function in gene regulation, chromosome organization, recombination, repair, or replication, and mutation of those elements can affect genome function and cause disease. Although numerous epigeno
Autor:
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Donald C Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher Lanczycki, Stacy Lathrop, Zhiyong Lu, Francoise Thibaud-Nissen, Terence Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W Trawick, Kim D Pruitt, Stephen T Sherry
Publikováno v:
Nucleic Acids Res
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts publi
Autor:
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Donald C Comeau, Catherine M Farrell, Michael Feldgarden, Anna M Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L Madden, Adriana Malheiro, Aron Marchler-Bauer, Terence D Murphy, Lon Phan, Shashikant Pujar, Sanjida H Rangwala, Valerie A Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W Trawick, Kim D Pruitt, Stephen T Sherry
Publikováno v:
Nucleic Acids Res
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a57078e0f67eb3b452a111fba83e1926
https://europepmc.org/articles/PMC9825438/
https://europepmc.org/articles/PMC9825438/
Autor:
Eric W Sayers, Mark Cavanaugh, Karen Clark, Kim D Pruitt, Stephen T Sherry, Linda Yankie, Ilene Karsch-Mizrachi
Publikováno v:
Nucleic Acids Res
GenBank® (https://www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains 19.6 trillion base pairs from over 2.9 billion nucleotide sequences for 504 000 formally described species. Daily data exchange with the European Nucl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d51272d810dc1175be6ccc94e1a9a670
https://europepmc.org/articles/PMC9825519/
https://europepmc.org/articles/PMC9825519/
Autor:
Ryan Connor, David A. Yarmosh, Wolfgang Maier, Migun Shakya, Ross Martin, Rebecca Bradford, J. Rodney Brister, Patrick SG Chain, Courtney A. Copeland, Julia di Iulio, Bin Hu, Philip Ebert, Jonathan Gunti, Yumi Jin, Kenneth S. Katz, Andrey Kochergin, Tré LaRosa, Jiani Li, Po-E Li, Chien-Chi Lo, Sujatha Rashid, Evguenia S. Maiorova, Chunlin Xiao, Vadim Zalunin, Kim D. Pruitt
Publikováno v:
bioRxiv
During the COVID-19 pandemic, SARS-CoV-2 surveillance efforts integrated genome sequencing of clinical samples to identify emergent viral variants and to support rapid experimental examination of genome-informed vaccine and therapeutic designs. Given
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6550d09025416ae5944daa3d0cdbd47c
https://europepmc.org/articles/PMC9645426/
https://europepmc.org/articles/PMC9645426/
Autor:
Mara K. N. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katharina J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose Victor Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards
Publikováno v:
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Lawniczak, M K N, Durbin, R, Flicek, P, Lindblad-Toh, K, Wei, X, Archibald, J M, Baker, W J, Belov, K, Blaxter, M L, Bonet, T M, Childers, A K, Coddington, J A, Crandall, K A, Crawford, A J, Davey, R P, Palma, F D, Fang, Q, Haerty, W, Hall, N, Hoff, K J, Howe, K, Jarvis, E D, Johnson, W E, Johnson, R N, Kersey, P J, Liu, X, Lopez, J V, Myers, E W, Pettersson, O V, Phillippy, A M, Poelchau, M F, Pruitt, K D, Rhie, A, Castilla-Rubio, J C, Sahu, S K, Salmon, N A, Soltis, P S, Swarbreck, D, Thibaud-Nissen, F, Wang, S, Wegrzyn, J L, Zhang, G, Zhang, H, Lewin, H A & Richards, S 2022, ' Standards recommendations for the Earth BioGenome Project ', PNAS, vol. 119, no. 4, e2115639118 . https://doi.org/10.1073/pnas.2115639118
Proceedings of the National Academy of Sciences of the United States of America, vol 119, iss 4
Proceedings of the National Academy of Sciences of the United States of America
Universitat Autònoma de Barcelona
Lawniczak, M K N, Durbin, R, Flicek, P, Lindblad-Toh, K, Wei, X, Archibald, J M, Baker, W J, Belov, K, Blaxter, M L, Bonet, T M, Childers, A K, Coddington, J A, Crandall, K A, Crawford, A J, Davey, R P, Palma, F D, Fang, Q, Haerty, W, Hall, N, Hoff, K J, Howe, K, Jarvis, E D, Johnson, W E, Johnson, R N, Kersey, P J, Liu, X, Lopez, J V, Myers, E W, Pettersson, O V, Phillippy, A M, Poelchau, M F, Pruitt, K D, Rhie, A, Castilla-Rubio, J C, Sahu, S K, Salmon, N A, Soltis, P S, Swarbreck, D, Thibaud-Nissen, F, Wang, S, Wegrzyn, J L, Zhang, G, Zhang, H, Lewin, H A & Richards, S 2022, ' Standards recommendations for the Earth BioGenome Project ', PNAS, vol. 119, no. 4, e2115639118 . https://doi.org/10.1073/pnas.2115639118
Proceedings of the National Academy of Sciences of the United States of America, vol 119, iss 4
Proceedings of the National Academy of Sciences of the United States of America
Funder: Howard Hughes Medical Institute
Funder: National Science Foundation; Grant(s): DBI:IIBR:CAREER #1943371
A global international initiative such as the Earth BioGenome Project (EBP) requires both agreement and coordination on standard
Funder: National Science Foundation; Grant(s): DBI:IIBR:CAREER #1943371
A global international initiative such as the Earth BioGenome Project (EBP) requires both agreement and coordination on standard
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f849f5f162d39a46903908f260e7939c