Structure of the signal transduction protein TRAP (target of RNAIII-activating protein)

Autor: Kim Henrick, Miriam Hirshberg

Publikováno v: Acta Crystallographica Section F Structural Biology and Crystallization Communications. 68:744-750

The crystal structure of the signal transduction protein TRAP is reported at 1.85 Å resolution. The structure of TRAP consists of a central eight-stranded β-barrel flanked asymmetrically by helices and is monomeric both in solution and in the cryst

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1dc206716898bb9f0762942ed1f50226
https://doi.org/10.1107/s1744309112020167

EMDataBank.org: unified data resource for CryoEM

Autor: Batsal Devkota, I. Rees, Wah Chiu, Matthew T. Dougherty, Catherine L. Lawson, Gerard J. Kleywegt, John D. Westbrook, Ingvar Lagerstedt, Joe D. Warren, Chunxiao Bi, Glen van Ginkel, Christoph Best, Powei Feng, Kim Henrick, Sameer Velankar, Raul Sala, Matthew L. Baker, Gaurav Sahni, Thomas J. Oldfield, Steven J. Ludtke, Helen M. Berman, Richard H. Newman

Publikováno v: Nucleic Acids Research

Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. EMDataBank.org, a joint effort of the Protein Data Bank in Europe (PDBe), the Research Collaboratory

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c33ff004f0ab41b8059b1e4b098970b4
http://europepmc.org/articles/PMC3013769

Data Deposition and Annotation at the Worldwide Protein Data Bank

Autor: G. J. Swaminathan, Helen M. Berman, Haruki Nakamura, Kim Henrick, Jasmine Young, Takanori Matsuura, Shuchismita Dutta, Kyle Burkhardt

Publikováno v: Molecular Biotechnology. 42:1-13

The Protein Data Bank (PDB) is the repository for three-dimensional structures of biological macromolecules, determined by experimental methods. The data in the archive is free and easily available via the Internet from any of the worldwide centers m

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7e26202ea8914499263836e2097a7a6
https://doi.org/10.1007/s12033-008-9127-7

Remediation of the protein data bank archive

Autor: Judith L. Flippen-Anderson, John Ionides, G. Jawahar Swaminathan, Dimitris Dimitropoulos, Huanwang Yang, Wolfgang F. Bluhm, Yukiko Shimizu, Jasmine Young, Jurgen F. Doreleijers, Helen M. Berman, Jeramia Ory, Richard H. Newman, Muhammed Yousufuddin, Haruki Nakamura, John L. Markley, Kim Henrick, Reiko Yamashita, John D. Westbrook, Eldon L. Ulrich, Zukang Feng, Chisa Kamada, Eugene Krissinel, Shuchismita Dutta, Sameer Velankar, Catherine L. Lawson, Wim F. Vranken

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, 36, D426-33
Nucleic Acids Research, 36, Database issue, pp. D426-33

Contains fulltext : 71213.pdf (Publisher’s version ) (Open Access) The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB arc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5de0c8829d5a97b6af99f96935756884
https://hdl.handle.net/2066/71213

SPINE bioinformatics and data-management aspects of high-throughput structural biology

Autor: Abdelkrim Rachedi, Clifford E. Felder, Pedro M. Alzari, M. Ben Jelloul, Janet M. Thornton, Raymond Ripp, Bruno Canard, G. Whamond, Luc Moulinier, Joel L. Sussman, J.M. Diprose, Antonio Rosato, Kim Henrick, Olivier Poch, Robert Esnouf, I M Berry, Richard J. Morris, L. G. Carter, Shira Albeck, Jean-Claude Thierry, Anastassis Perrakis, Israel Silman, Tom Oinn, Hélène Malet, Ivano Bertini, Serge X. Cohen, Claudio Luchinat, Sonia Longhi, Yoav Peleg, Tamar Unger, François Ferron, Claudia Andreini, Jaime Prilusky, Orly Dym, Roman A. Laskowski, Lucia Banci, Christian Cambillau, Brendan Vaughan, Julia Watson, David I. Stuart, Wim F. Vranken, Julie D. Thompson, Rodrigo Lopez, Anne Pajon, F. Guillemot, T. Mochel, R. Hamer, Thomas Laurent

Publikováno v: Acta Crystallographica Section D: Biological Crystallography
Acta Crystallographica Section D: Biological Crystallography, International Union of Crystallography, 2006, 62 (Pt 10), pp.1184-95. ⟨10.1107/S090744490602991X⟩
Acta crystallographica Section D : Structural biology [1993-...]
Acta crystallographica Section D : Structural biology [1993-..], 2006, 62 (Pt 10), pp.1184-95. ⟨10.1107/S090744490602991X⟩

International audience; SPINE (Structural Proteomics In Europe) was established in 2002 as an integrated research project to develop new methods and technologies for high-throughput structural biology. Development areas were broken down into workpack

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c33d0d111c60f8bd831fc1a8ee79e312
https://doi.org/10.1107/s090744490602991x