Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates.

Autor: Washburn JD; USDA-ARS, MWA-PGRU, 302-A Curtis Hall, U. of MO., Columbia, MO, 65211, USA., Varela JI; Department of Plant and Agroecosystem Sciences, University of Wisconsin - Madison, 1575 Linden Drive, Madison, WI, 53706, USA.; Corteva Agrisciences, 8305 NW 62nd Ave, Johnston, IA, 50131, USA., Xavier A; Corteva Agrisciences, 8305 NW 62nd Ave, Johnston, IA, 50131, USA.; Department of Agronomy, Purdue University, 915 Mitch Daniels Blvd, West Lafayette, IN 47907, United States., Chen Q; Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA., Ertl D; Iowa Corn Promotion Board, Johnston, IA, 50131, USA., Gage JL; Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA., Holland JB; Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA.; USDA-ARS, Plant Science Research Unit, Raleigh, NC, 27695, USA., Lima DC; Department of Plant and Agroecosystem Sciences, University of Wisconsin - Madison, 1575 Linden Drive, Madison, WI, 53706, USA., Romay MC; Institute for Genomic Diversity, Cornell University, Ithaca, NY, 14853, USA., Lopez-Cruz M; Departments of Epidemiology & Biostatistics and Statistics & Probability, and Institute for Quantitative Health Science and Engineering, Michigan State University, 775 Woodlot Dr., East Lansing, MI, 48823, USA., de Los Campos G; Departments of Epidemiology & Biostatistics and Statistics & Probability, and Institute for Quantitative Health Science and Engineering, Michigan State University, 775 Woodlot Dr., East Lansing, MI, 48823, USA., Barber W; Corteva Agrisciences, 8305 NW 62nd Ave, Johnston, IA, 50131, USA., Zimmer C; Corteva Agrisciences, 8305 NW 62nd Ave, Johnston, IA, 50131, USA., Trucillo Silva I; Corteva Agrisciences, 8305 NW 62nd Ave, Johnston, IA, 50131, USA., Rocha F; Corteva Agrisciences, 8305 NW 62nd Ave, Johnston, IA, 50131, USA., Rincent R; Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, 91190 Gif-sur-Yvette, France., Ali B; Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, 91190 Gif-sur-Yvette, France., Hu H; Department of Plant Sciences, University of California Davis, One Shield Drive, Davis, CA, 95616, USA., Runcie DE; Department of Plant Sciences, University of California Davis, One Shield Drive, Davis, CA, 95616, USA., Gusev K; Smart Agri Labs, 2055 Limestone Rd STE 200-C, Wilmington, DE, 19808, USA., Slabodkin A; Smart Agri Labs, 2055 Limestone Rd STE 200-C, Wilmington, DE, 19808, USA., Bax P; Smart Agri Labs, 2055 Limestone Rd STE 200-C, Wilmington, DE, 19808, USA., Aubert J; Université Paris-Saclay, AgroParisTech, INRAE, UMR MIA Paris-Saclay, 91120, Palaiseau, France., Gangloff H; Université Paris-Saclay, AgroParisTech, INRAE, UMR MIA Paris-Saclay, 91120, Palaiseau, France., Mary-Huard T; Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, 91190 Gif-sur-Yvette, France.; Université Paris-Saclay, AgroParisTech, INRAE, UMR MIA Paris-Saclay, 91120, Palaiseau, France., Vanrenterghem T; Université Paris-Saclay, AgroParisTech, INRAE, UMR MIA Paris-Saclay, 91120, Palaiseau, France., Quesada-Traver C; Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Universitätstrasse 2, CH-8092 Zurich, Switzerland., Yates S; Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Universitätstrasse 2, CH-8092 Zurich, Switzerland., Ariza-Suárez D; Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Universitätstrasse 2, CH-8092 Zurich, Switzerland., Ulrich A; Puregene AG, Etzmatt 273, CH-4314 Zeiningen, Switzerland.; Institute of Agricultural Sciences, ETH Zurich, Universitätstrasse 2, CH-8092 Zürich, Switzerland., Wyler M; MWSchmid GmbH, Hauptstrasse 34, CH-8750 Glarus, Switzerland., Kick DR; USDA-ARS, MWA-PGRU, 302-A Curtis Hall, U. of MO., Columbia, MO, 65211, USA., Bellis ES; Department of Computer Science, Arkansas State University, 2105 E. Aggie Rd., Jonesboro, AR, 72401, USA., Causey JL; Department of Computer Science, Arkansas State University, 2105 E. Aggie Rd., Jonesboro, AR, 72401, USA., Soriano Chavez E; Department of Computer Science, Arkansas State University, 2105 E. Aggie Rd., Jonesboro, AR, 72401, USA., Wang Y; Department of Computer Science, Arkansas State University, 2105 E. Aggie Rd., Jonesboro, AR, 72401, USA., Piyush V; Department of Statistics, University of Nebraska - Lincoln, 340 Hardin Hall North Wing, Lincoln, NE, 68583, USA., Fernando GD; Department of Statistics, University of Nebraska - Lincoln, 340 Hardin Hall North Wing, Lincoln, NE, 68583, USA., Hu RK; Genomics and Computational Biology, Perelman School of Medicine at the University of Pennsylvania, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA., Kumar R; Genomics and Computational Biology, Perelman School of Medicine at the University of Pennsylvania, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.; Medical Scientist Training Program, Perelman School of Medicine at the University of Pennsylvania, University of Pennsylvania, 3400 Civic Center Blvd., Philadelphia, PA, 19104, USA., Timon AJ; Genomics and Computational Biology, Perelman School of Medicine at the University of Pennsylvania, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA., Venkatesh R; Genomics and Computational Biology, Perelman School of Medicine at the University of Pennsylvania, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA., Segura Abá K; DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.; Genetics and Genome Sciences Graduate Program, Michigan State University, East Lansing, MI, 48824, USA., Chen H; Genetics and Genome Sciences Graduate Program, Michigan State University, East Lansing, MI, 48824, USA., Ranaweera T; DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA., Shiu SH; DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.; Department of Computational Mathematics, Science, and Engineering, Michigan State University, East Lansing, MI, 48824, USA., Wang P; NC Plant Science Initiative, North Carolina State University, 840 Oval Drive, Raleigh, NC, 27606, USA.; Department of Electrical and Computer Engineering, North Carolina State University, 890 Oval Dr, Raleigh, NC, 27606, USA., Gordon MJ; NC Plant Science Initiative, North Carolina State University, 840 Oval Drive, Raleigh, NC, 27606, USA.; Department of Electrical and Computer Engineering, North Carolina State University, 890 Oval Dr, Raleigh, NC, 27606, USA., Amos BK; NC Plant Science Initiative, North Carolina State University, 840 Oval Drive, Raleigh, NC, 27606, USA.; Department of Electrical and Computer Engineering, North Carolina State University, 890 Oval Dr, Raleigh, NC, 27606, USA., Busato S; NC Plant Science Initiative, North Carolina State University, 840 Oval Drive, Raleigh, NC, 27606, USA.; Department of Electrical and Computer Engineering, North Carolina State University, 890 Oval Dr, Raleigh, NC, 27606, USA., Perondi D; NC Plant Science Initiative, North Carolina State University, 840 Oval Drive, Raleigh, NC, 27606, USA.; Department of Electrical and Computer Engineering, North Carolina State University, 890 Oval Dr, Raleigh, NC, 27606, USA., Gogna A; Department of Breeding Research, Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, Corrensstraße 3, Gatersleben, 6466, Germany., Psaroudakis D; Department of Molecular Genetics, Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, Corrensstraße 3, Gatersleben, 6466, Germany., Chen CPJ; School of Animal Sciences, Virginia Tech, Blacksburg, VA, 24061, USA., Al-Mamun HA; School of Biological Sciences and Centre of Applied Bioinformatics, University of Western Australia, Perth, WA 6009, Australia., Danilevicz MF; School of Biological Sciences and Centre of Applied Bioinformatics, University of Western Australia, Perth, WA 6009, Australia., Upadhyaya SR; School of Biological Sciences and Centre of Applied Bioinformatics, University of Western Australia, Perth, WA 6009, Australia., Edwards D; School of Biological Sciences and Centre of Applied Bioinformatics, University of Western Australia, Perth, WA 6009, Australia., de Leon N; Department of Plant and Agroecosystem Sciences, University of Wisconsin - Madison, 1575 Linden Drive, Madison, WI, 53706, USA.

Publikováno v: Genetics [Genetics] 2024 Nov 22. Date of Electronic Publication: 2024 Nov 22.

Yield prediction through integration of genetic, environment, and management data through deep learning.

Autor: Kick DR; United States Department of Agriculture, Agricultural Research Service Plant Genetics Research Unit, Columbia, MO 65211, USA.; Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA., Wallace JG; Department of Crop & Soil Science, University of Georgia, Athens, GA 30602, USA., Schnable JC; Center for Plant Science Innovation and Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68588, USA., Kolkman JM; School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA., Alaca B; Division of Plant Breeding Methodology, Department of Crop Science, University of Goettingen, Goettingen 37073, Germany.; Center for Integrated Breeding Research, University of Goettingen, Goettingen 37073, Germany., Beissinger TM; Division of Plant Breeding Methodology, Department of Crop Science, University of Goettingen, Goettingen 37073, Germany.; Center for Integrated Breeding Research, University of Goettingen, Goettingen 37073, Germany., Edwards J; United States Department of Agriculture, Agricultural Research Service, Ames, IA 50011, USA., Ertl D; Research and Business Development, Iowa Corn Promotion Board, Johnston, IA 50131, USA., Flint-Garcia S; United States Department of Agriculture, Agricultural Research Service Plant Genetics Research Unit, Columbia, MO 65211, USA., Gage JL; Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC 27695, USA., Hirsch CN; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA., Knoll JE; United States Department of Agriculture, Agricultural Research Service Crop Genetics and Breeding Research Unit, Tifton, GA 31793, USA., de Leon N; Department of Agronomy, University of Wisconsin, Madison, WI 53706, USA., Lima DC; Plant Breeding and Plant Genetics Program, University of Wisconsin, Madison, WI 53706, USA., Moreta DE; School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA., Singh MP; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA., Thompson A; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA., Weldekidan T; Plant and Soil Sciences, University of Delaware, Newark, DE 19716, USA., Washburn JD; United States Department of Agriculture, Agricultural Research Service Plant Genetics Research Unit, Columbia, MO 65211, USA.; Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Apr 11; Vol. 13 (4).

Molecular profiling of single neurons of known identity in two ganglia from the crab Cancer borealis .

Autor: Northcutt AJ; Division of Biological Sciences, University of Missouri-Columbia, Columbia, MO 65211.; Neural Systems and Behavior Course, Marine Biological Laboratory, Woods Hole, MA 02543., Kick DR; Division of Biological Sciences, University of Missouri-Columbia, Columbia, MO 65211., Otopalik AG; Volen Center and Biology Department, Brandeis University, Waltham, MA 02454., Goetz BM; Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX 78712., Harris RM; Neural Systems and Behavior Course, Marine Biological Laboratory, Woods Hole, MA 02543.; Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX 78712.; Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712.; Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712., Santin JM; Division of Biological Sciences, University of Missouri-Columbia, Columbia, MO 65211., Hofmann HA; Neural Systems and Behavior Course, Marine Biological Laboratory, Woods Hole, MA 02543.; Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX 78712.; Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712.; Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712.; Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712., Marder E; Volen Center and Biology Department, Brandeis University, Waltham, MA 02454., Schulz DJ; Division of Biological Sciences, University of Missouri-Columbia, Columbia, MO 65211.; Neural Systems and Behavior Course, Marine Biological Laboratory, Woods Hole, MA 02543.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2019 Dec 26; Vol. 116 (52), pp. 26980-26990. Date of Electronic Publication: 2019 Dec 05.

Dopamine maintains network synchrony via direct modulation of gap junctions in the crustacean cardiac ganglion.

Autor: Lane BJ; Division of Biological Sciences, University of Missouri, Columbia, United States., Kick DR; Division of Biological Sciences, University of Missouri, Columbia, United States., Wilson DK; Division of Biological Sciences, University of Missouri, Columbia, United States., Nair SS; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, United States., Schulz DJ; Division of Biological Sciences, University of Missouri, Columbia, United States.

Publikováno v: ELife [Elife] 2018 Oct 16; Vol. 7. Date of Electronic Publication: 2018 Oct 16.

The Hillary Climber trumps manual testing: an automatic system for studying Drosophila climbing.

Autor: Willenbrink AM; a Division of Biological Sciences, College of Arts and Sciences , University of Missouri , Columbia , MO , USA.; b Department of Bioengineering, College of Engineering , University of Missouri , Columbia , MO , USA., Gronauer MK; a Division of Biological Sciences, College of Arts and Sciences , University of Missouri , Columbia , MO , USA., Toebben LF; c The Life Sciences Center Machine Shop, College of Arts and Sciences , University of Missouri , Columbia , MO , USA., Kick DR; a Division of Biological Sciences, College of Arts and Sciences , University of Missouri , Columbia , MO , USA., Wells M; d Father Tolton Catholic High school , Columbia , MO , USA., Zhang B; a Division of Biological Sciences, College of Arts and Sciences , University of Missouri , Columbia , MO , USA.

Publikováno v: Journal of neurogenetics [J Neurogenet] 2016 Sep - Dec; Vol. 30 (3-4), pp. 205-211. Date of Electronic Publication: 2016 Nov 21.