A meta-analysis of bulk RNA-seq datasets identifies potential biomarkers and repurposable therapeutics against Alzheimer's disease.

Autor: Lamisa AB; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka, 1229, Bangladesh.; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Ahammad I; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Bhattacharjee A; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Hossain MU; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Ishtiaque A; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka, 1229, Bangladesh., Chowdhury ZM; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Das KC; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Salimullah M; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Savar, Dhaka, 1349, Ashulia, Bangladesh., Keya CA; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka, 1229, Bangladesh. chaman.keya@northsouth.edu.

Publikováno v: Scientific reports [Sci Rep] 2024 Oct 21; Vol. 14 (1), pp. 24717. Date of Electronic Publication: 2024 Oct 21.

AITeQ: a machine learning framework for Alzheimer's prediction using a distinctive five-gene signature.

Autor: Ahammad I; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Lamisa AB; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Bhattacharjee A; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Jamal TB; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Arefin MS; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka 1229, Bangladesh., Chowdhury ZM; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Hossain MU; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Das KC; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh., Keya CA; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka 1229, Bangladesh., Salimullah M; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka 1349, Bangladesh.

Publikováno v: Briefings in bioinformatics [Brief Bioinform] 2024 May 23; Vol. 25 (4).

Proteome-Based Investigation Identified Potential Drug Repurposable Small Molecules Against Monkeypox Disease.

Autor: Bhattacharjee A; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Ahammad I; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Chowdhury ZM; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Das KC; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Keya CA; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka, 1229, Bangladesh., Salimullah M; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh. salim2969@gmail.com.

Publikováno v: Molecular biotechnology [Mol Biotechnol] 2024 Apr; Vol. 66 (4), pp. 626-640. Date of Electronic Publication: 2022 Nov 10.

Identification of repurposable drug targets in Mycoplasma pneumoniae using subtractive genomics, molecular docking and dynamics simulation.

Autor: Chowdhury ZM; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Jamal TB; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Ahammad I; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Bhattacharjee A; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Lamisa AB; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Jani JM; Department of Biotechnology and Genetic Engineering, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj, 8100, Bangladesh., Israk MF; Department of Biotechnology and Genetic Engineering, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj, 8100, Bangladesh., Hossain MU; Bioinformatics Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Das KC; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh., Keya CA; Department of Biochemistry and Microbiology, North South University, Bashundhara, Dhaka, 1229, Bangladesh., Salimullah M; Molecular Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh.

Publikováno v: Heliyon [Heliyon] 2023 Nov 04; Vol. 9 (11), pp. e21466. Date of Electronic Publication: 2023 Nov 04 (Print Publication: 2023).

Pharmacoinformatics and molecular dynamics simulation approach to identify anti-diarrheal potentials of Centella asiatica (L.) Urb. against Vibrio cholerae .

Autor: Al-Mamun A; Department of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh., Ahammad I; Bioinformatics Division, National Institute of Biotechnology, Dhaka, Bangladesh., Ahmed SS; Department of Botany, Faculty of Biological Sciences, University of Dhaka, Dhaka, Bangladesh., Akter F; Department of Botany, Faculty of Biological Sciences, University of Dhaka, Dhaka, Bangladesh., Hossain SI; Department of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh., Chowdhury ZM; Bioinformatics Division, National Institute of Biotechnology, Dhaka, Bangladesh., Bhattacharjee A; Bioinformatics Division, National Institute of Biotechnology, Dhaka, Bangladesh., Das KC; Molecular Biotechnology Division, National Institute of Biotechnology, Dhaka, Bangladesh., Keya CA; Department of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh., Salimullah M; Molecular Biotechnology Division, National Institute of Biotechnology, Dhaka, Bangladesh.

Publikováno v: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2023; Vol. 41 (24), pp. 14730-14743. Date of Electronic Publication: 2023 Mar 16.