Zobrazeno 1 - 5
of 5
pro vyhledávání: '"Kevin Palis"'
Autor:
Locedie Mansueto, Roven Rommel Fuentes, Dmytro Chebotarov, Frances Nikki Borja, Jeffrey Detras, Juan Miguel Abriol-Santos, Kevin Palis, Alexandre Poliakov, Inna Dubchak, Victor Solovyev, Ruaraidh Sackville Hamilton, Kenneth L. McNally, Nickolai Alexandrov, Ramil Mauleon
Publikováno v:
Current Plant Biology, Vol 7, Iss C, Pp 16-25 (2016)
The 3000 Rice Genomes Project generated a large dataset of genomic variation to the world’s most important crop, Oryza sativa L. Using the Burrows-Wheeler Aligner (BWA) and the Genome Analysis Toolkit (GATK) variant calling on this dataset, we iden
Externí odkaz:
https://doaj.org/article/0f453519967f4c62b512b95d4e3651c0
Autor:
Kenneth L. McNally, Frances Nikki Borja, Ramil Mauleon, Ruaraidh Sackville Hamilton, Dmytro Chebotarov, Jeffrey Detras, Roven Rommel Fuentes, Nickolai Alexandrov, Juan Miguel Abriol-Santos, Kevin Palis, Victor V. Solovyev, Inna Dubchak, Alexandre Poliakov, Locedie Mansueto
Publikováno v:
Current Plant Biology, Vol 7, Iss C, Pp 16-25 (2016)
The 3000 Rice Genomes Project generated a large dataset of genomic variation to the world’s most important crop, Oryza sativa L. Using the Burrows-Wheeler Aligner (BWA) and the Genome Analysis Toolkit (GATK) variant calling on this dataset, we iden
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0717c90f3ee588c4c2785c5a1d01f9e5
http://www.sciencedirect.com/science/article/pii/S2214662816300780
http://www.sciencedirect.com/science/article/pii/S2214662816300780
Autor:
Locedie Mansueto, Roven Rommel Fuentes, Dmytro Chebotarov, Victor Jun Ulat, Gengyun Zhang, Kenneth L. McNally, Ruaraidh Sackville Hamilton, Nickolai Alexandrov, Kevin Palis, Ramil Mauleon, Shuaishuai Tai, Wensheng Wang, Zhikang Li
Publikováno v:
Nucleic Acids Research
We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/), which consists
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f39a47986ee88b28ab55af8cdc63bc30
http://europepmc.org/articles/PMC4383887
http://europepmc.org/articles/PMC4383887
Autor:
Min Li, Miaolin Chen, Kevin Palis, Rod A. Wing, Dario Copetti, Jinyuan Lu, Hei Leung, Jeffrey Detras, Xianchang He, Zhiqiang Hu, Yanhong Li, Zhen Yue, Jayson Talag, Jiayang Li, John Robert Mendoza, Jiabao Xu, Locedie Mansueto, Wensheng Wang, Victor Jun Ulat, Tianqing Zheng, Ye Yin, Ma. Elizabeth B. Naredo, Kenneth L. McNally, Nickolai Alexandrov, Jauhar Ali, Alexander Poliakov, Fei Shen, Roven Rommel Fuentes, Xiaodong Fang, Rui Li, Xiuqin Zhao, Jue Ruan, Yongming Gao, Yue Zhao, Zhikang Li, Chaochun Wei, Dmytro Chebotarov, Jing Li, Jianlong Xu, Jia Ben, Hong Yu, Dave Kudrna, Millicent D. Sanciangco, Hongliang Zhang, Shuaishuai Tai, Xueqiang Wang, Yongchao Niu, Wushu Hu, Fan Zhang, Chunchao Wang, Binying Fu, Zhichao Wu, Xinyuan Zhang, Inna Dubchak, Jianxin Shi, Qiang Gao, Xiao Cui, Frances Nikki Borja, Zhaotong Dong, Jianwei Zhang, Chen Sun, Ruaraidh Sackville Hamilton, Miao Wang, Jinjie Li, Jean-Christophe Glaszmann, Seunghee Lee, Dabing Zhang, Gengyun Zhang, Zichao Li, Ramil Mauleon, Yongli Zhou
Publikováno v:
Nature
Here we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our results are consistent with the five major groups previously recognized
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df674ce5b15a88a4889eba1345e00687
https://pubmed.ncbi.nlm.nih.gov/29695866
https://pubmed.ncbi.nlm.nih.gov/29695866
Autor:
Victor V. Solovyev, Nickolai Alexandrov, Juan Miguel Abriol-Santos, Rod A. Wing, Kenneth L. McNally, Ramil Mauleon, Roven Rommel Fuentes, Kevin Palis, Locedie Mansueto, Alexandre Poliakov, Dmytro Chebotarov, Inna Dubchak, Dario Copetti, Frances Nikki Borja, Ruaraidh Sackville Hamilton, Jeffery Detras, Millicent D. Sanciangco
Publikováno v:
Nucleic Acids Research
We describe updates to the Rice SNP-Seek Database since its first release. We ran a new SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core SNP datasets. Besides the Nipponbare reference genome, the pipeline
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::889483a1b76141ca0f8051116c9c7262
https://pubmed.ncbi.nlm.nih.gov/27899667
https://pubmed.ncbi.nlm.nih.gov/27899667