GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences.

Autor: Walsh CJ; Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at the Peter Doherty Institute for Infection & Immunity, 792 Elizabeth Street, Melbourne VIC 3000, Australia., Srinivas M; Teagasc Food Research Centre, Moorepark, Cork, Ireland.; APC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland., Stinear TP; Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at the Peter Doherty Institute for Infection & Immunity, 792 Elizabeth Street, Melbourne VIC 3000, Australia., van Sinderen D; APC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland., Cotter PD; Teagasc Food Research Centre, Moorepark, Cork, Ireland.; APC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland.; VistaMilk SFI Research Centre, Teagasc Moorepark, Cork, Ireland., Kenny JG; Teagasc Food Research Centre, Moorepark, Cork, Ireland.; APC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland.; VistaMilk SFI Research Centre, Teagasc Moorepark, Cork, Ireland.

Publikováno v: Microbial genomics [Microb Genom] 2024 Jun; Vol. 10 (6).

Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol.

Autor: Mukherjee A; Department of Food Biosciences, Teagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland., Iyer A; Department of Food Biosciences, Teagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland., Gómez-Sala B; Department of Food Biosciences, Teagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland.; APC Microbiome Ireland, University College Cork, Cork, County Cork, Ireland., O'Connor E; APC Microbiome Ireland, University College Cork, Cork, County Cork, Ireland.; Department of Biological Sciences, University of Limerick, Limerick, Ireland., Kenny JG; Department of Food Biosciences, Teagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland.; APC Microbiome Ireland, University College Cork, Cork, County Cork, Ireland., Cotter PD; Department of Food Biosciences, Teagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland paul.cotter@teagasc.ie.; APC Microbiome Ireland, University College Cork, Cork, County Cork, Ireland.; Vistamilk, Cork, Ireland.

Publikováno v: BMJ open [BMJ Open] 2023 May 17; Vol. 13 (5), pp. e067766. Date of Electronic Publication: 2023 May 17.

Panel sequencing links rare, likely damaging gene variants with distinct clinical phenotypes and outcomes in juvenile-onset SLE.

Autor: Charras A; Department of Women's & Children's Health, Institute of Life Course and Medical Sciences., Haldenby S; Centre for Genomic Research, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool., Smith EMD; Department of Women's & Children's Health, Institute of Life Course and Medical Sciences.; Department of Paediatric Rheumatology, Alder Hey Children's NHS Foundation Trust Hospital, Liverpool, UK., Egbivwie N; Department of Women's & Children's Health, Institute of Life Course and Medical Sciences.; Department of Paediatric Rheumatology, Alder Hey Children's NHS Foundation Trust Hospital, Liverpool, UK., Olohan L; Centre for Genomic Research, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool., Kenny JG; Centre for Genomic Research, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool.; Teagasc Food Research Centre, Moorepark, Cork, Ireland., Schwarz K; Institut for Transfusion Medicine, University Ulm, Ulm.; Institute for Clinical Transfusion Medicine and Immunogenetics Ulm, German Red Cross Blood Service Baden-Württemberg-Hessen, Ulm, Germany., Roberts C; Department of Women's & Children's Health, Institute of Life Course and Medical Sciences., Al-Abadi E; Department of Rheumatology, Birmingham Children's Hospital, Birmingham., Armon K; Department of Paediatric Rheumatology, Cambridge University Hospitals, Cambridge., Bailey K; Department of Paediatric Rheumatology, Oxford University Hospitals NHS Foundation Trust, Oxford., Ciurtin C; Centre for Adolescent Rheumatology, University College London, London., Gardner-Medwin J; Department of Child Health, University of Glasgow, Glasgow., Haslam K; Department of Paediatrics, Bradford Royal Infirmary, Bradford., Hawley DP; Department of Paediatric Rheumatology, Sheffield Children's Hospital, Sheffield., Leahy A; Department of Paediatric Rheumatology, Southampton General Hospital, Southampton., Leone V; Department of Paediatric Rheumatology, Leeds Children Hospital, Leeds., McErlane F; Paediatric Rheumatology, Great North Children's Hospital, Royal Victoria Infirmary, Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne., Modgil G; Department of Paediatrics, Musgrove Park Hospital, Taunton., Pilkington C; Department of Paediatric Rheumatology, Great Ormond Street Hospital, London., Ramanan AV; University Hospitals Bristol NHS Foundation Trust & Bristol Medical School, University of Bristol, Bristol., Rangaraj S; Department of Paediatric Rheumatology, Nottingham University Hospitals, Nottingham., Riley P; Department of Paediatric Rheumatology, Royal Manchester Children's Hospital, Manchester., Sridhar A; Department of Paediatrics, Leicester Royal Infirmary, Leicester, UK., Beresford MW; Department of Women's & Children's Health, Institute of Life Course and Medical Sciences.; Centre for Genomic Research, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool., Hedrich CM; Department of Women's & Children's Health, Institute of Life Course and Medical Sciences.; Centre for Genomic Research, Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool.

Publikováno v: Rheumatology (Oxford, England) [Rheumatology (Oxford)] 2023 Feb 23; Vol. 62 (SI2), pp. SI210-SI225.

From Farm to Fork: Streptococcus suis as a Model for the Development of Novel Phage-Based Biocontrol Agents.

Autor: Osei EK; School of Microbiology, University College Cork, T12 K8AF Cork, Ireland.; APC Microbiome Ireland, University College Cork, T12 K8AF Cork, Ireland.; Food Bioscience, Teagasc Food Research Centre Moorepark, Fermoy, P61 C996 Cork, Ireland., Mahony J; School of Microbiology, University College Cork, T12 K8AF Cork, Ireland.; APC Microbiome Ireland, University College Cork, T12 K8AF Cork, Ireland., Kenny JG; APC Microbiome Ireland, University College Cork, T12 K8AF Cork, Ireland.; Food Bioscience, Teagasc Food Research Centre Moorepark, Fermoy, P61 C996 Cork, Ireland.; VistaMilk SFI Research Centre, Fermoy, P61 C996 Cork, Ireland.

Publikováno v: Viruses [Viruses] 2022 Sep 09; Vol. 14 (9). Date of Electronic Publication: 2022 Sep 09.

Impact of DNA extraction, PCR amplification, sequencing, and bioinformatic analysis on food-associated mock communities using PacBio long-read amplicon sequencing.

Autor: Baer, Mareike¹ (AUTHOR) mabaer@uni-bonn.de, Höppe, Lisa¹ (AUTHOR), Seel, Waldemar² (AUTHOR), Lipski, André¹ (AUTHOR)

Publikováno v: BMC Microbiology. 12/6/2024, Vol. 24 Issue 1, p1-17. 17p.