Zobrazeno 1 - 10
of 56
pro vyhledávání: '"Kenneth E Rudd"'
Autor:
Esther Peña-Soler, Francisco J Fernandez, Miguel López-Estepa, Fernando Garces, Andrew J Richardson, Juan F Quintana, Kenneth E Rudd, Miquel Coll, M Cristina Vega
Publikováno v:
PLoS ONE, Vol 9, Iss 7, p e102139 (2014)
In order to maintain proper cellular function, the metabolism of the bacterial microbiota presents several mechanisms oriented to keep a correctly balanced amino acid pool. Central components of these mechanisms are enzymes with alanine transaminase
Externí odkaz:
https://doaj.org/article/fcb72588202145cfa76f2cda9bc9b2b3
Autor:
Brian P Anton, Yi-Chien Chang, Peter Brown, Han-Pil Choi, Lina L Faller, Jyotsna Guleria, Zhenjun Hu, Niels Klitgord, Ami Levy-Moonshine, Almaz Maksad, Varun Mazumdar, Mark McGettrick, Lais Osmani, Revonda Pokrzywa, John Rachlin, Rajeswari Swaminathan, Benjamin Allen, Genevieve Housman, Caitlin Monahan, Krista Rochussen, Kevin Tao, Ashok S Bhagwat, Steven E Brenner, Linda Columbus, Valérie de Crécy-Lagard, Donald Ferguson, Alexey Fomenkov, Giovanni Gadda, Richard D Morgan, Andrei L Osterman, Dmitry A Rodionov, Irina A Rodionova, Kenneth E Rudd, Dieter Söll, James Spain, Shuang-Yong Xu, Alex Bateman, Robert M Blumenthal, J Martin Bollinger, Woo-Suk Chang, Manuel Ferrer, Iddo Friedberg, Michael Y Galperin, Julien Gobeill, Daniel Haft, John Hunt, Peter Karp, William Klimke, Carsten Krebs, Dana Macelis, Ramana Madupu, Maria J Martin, Jeffrey H Miller, Claire O'Donovan, Bernhard Palsson, Patrick Ruch, Aaron Setterdahl, Granger Sutton, John Tate, Alexander Yakunin, Dmitri Tchigvintsev, Germán Plata, Jie Hu, Russell Greiner, David Horn, Kimmen Sjölander, Steven L Salzberg, Dennis Vitkup, Stanley Letovsky, Daniel Segrè, Charles DeLisi, Richard J Roberts, Martin Steffen, Simon Kasif
Publikováno v:
PLoS Biology, Vol 11, Iss 8, p e1001638 (2013)
Externí odkaz:
https://doaj.org/article/08400167d9dc4fa29d1dc69cd0f6756f
Publikováno v:
Molecular Cell. 58:431-439
Repetitive extragenic palindromic (REP) sequences are highly structured elements found downstream of ∼500 genes in Escherichia coli that result in extensive stem-loop structures in their mRNAs. However, their physiological role has remained elusive
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45616061529cf8162635aac8cd42c999
https://doi.org/10.1016/j.molcel.2015.03.019
https://doi.org/10.1016/j.molcel.2015.03.019
Autor:
Rikiya Takeuchi, Barry L. Wanner, Hitomi Dose, Barry R. Bochner, Hirotada Mori, Tyrrell Conway, Shigeki Tanishima, Walid G. Aref, Yuta Otsuka, Ai Muto, Yukako Tohsato, Wataru Nomura, Chihiro Okada, Daisuke Kihara, Michael Gribskov, Toru Nakayashiki, Kenneth E. Rudd, Motokazu Ishikawa, Natsuko Yamamoto, Koichiro Nakamura, Kenji Nakahigashi, Sivasundaram Suharnan
Publikováno v:
Nucleic Acids Research
Comprehensive experimental resources, such as ORFeome clone libraries and deletion mutant collections, are fundamental tools for elucidation of gene function. Data sets by omics analysis using these resources provide key information for functional an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b9ebbe3b61ee7f8e5cfec26d3ea9a103
http://hdl.handle.net/10061/10977
http://hdl.handle.net/10061/10977
Autor:
Kenneth E. Rudd, Jindan Zhou
Publikováno v:
Nucleic Acids Research
EcoGene (http://ecogene.org) is a database and website devoted to continuously improving the structural and functional annotation of Escherichia coli K-12, one of the most well understood model organisms, represented by the MG1655(Seq) genome sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c40d12b732d6761695660f0fe76b57ee
http://europepmc.org/articles/PMC3531124
http://europepmc.org/articles/PMC3531124
Publikováno v:
Journal of Molecular Biology. 415:16-21
Ten methyltransferases and one pseudouridine synthase are required for complete modification of the small ribosomal subunit in Escherichia coli. Nine methyltransferases, as well as the pseudouridine synthase, are already known. Here, we identify RsmJ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::717d85f2a7ad20dbb927230318eed6df
https://doi.org/10.1016/j.jmb.2011.10.044
https://doi.org/10.1016/j.jmb.2011.10.044
Publikováno v:
Molecular Microbiology. 70:1487-1501
The correct annotation of genes encoding the smallest proteins is one of the biggest challenges of genome annotation, and perhaps more importantly, few annotated short open reading frames have been confirmed to correspond to synthesized proteins. We
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88570d9bf32b587db21ba1da8b774a9d
https://doi.org/10.1111/j.1365-2958.2008.06495.x
https://doi.org/10.1111/j.1365-2958.2008.06495.x
Autor:
Mary B. Berlyn, Ingrid M. Keseler, Guy Plunkett, Monica Riley, Takehide Kosuge, Frederick R. Blattner, Takashi Abe, Jeremy D. Glasner, David S. Wishart, Margrethe H. Serres, Nicholas R. Thomson, Hirotada Mori, Martha B. Arnaud, Nicole T. Perna, Roy R. Chaudhuri, Barry L. Wanner, Kenneth E. Rudd, Gavin H. Thomas, Takashi Horiuchi
Publikováno v:
Nucleic Acids Research
The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an organism entails identification of genes, the boundaries of genes in terms of precise start a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ccd606e988bf140b7bc66a7754797743
https://doi.org/10.1093/nar/gkj405
https://doi.org/10.1093/nar/gkj405
Autor:
Fernando Garces, Andrew J. Richardson, Esther Peña-Soler, Miquel Coll, Miguel López-Estepa, Juan F. Quintana, Francisco J. Fernández, M. Cristina Vega, Kenneth E. Rudd
Publikováno v:
PLoS ONE, Vol 9, Iss 7, p e102139 (2014)
PLoS ONE
'PloS One ', vol: 9, pages: e102139-1-e102139-15 (2014)
Digital.CSIC. Repositorio Institucional del CSIC
instname
PLoS ONE
'PloS One ', vol: 9, pages: e102139-1-e102139-15 (2014)
Digital.CSIC. Repositorio Institucional del CSIC
instname
15 p.-2 tab.-8 fig.
In order to maintain proper cellular function, the metabolism of the bacterial microbiota presents several mechanisms oriented to keep a correctly balanced amino acid pool. Central components of these mechanisms are enzymes w
In order to maintain proper cellular function, the metabolism of the bacterial microbiota presents several mechanisms oriented to keep a correctly balanced amino acid pool. Central components of these mechanisms are enzymes w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6b7d48d92fd0298d74c40dbf05f56e27
http://hdl.handle.net/10261/102802
http://hdl.handle.net/10261/102802
Bacterial, Archaeal, and Organellar rRNA Pseudouridines and Methylated Nucleosides and Their Enzymes
Autor:
Kenneth E. Rudd, James Ofengand
Publikováno v:
The Ribosome
rRNAs contain a number of different modified nucleosides, mainly, but not exclusively, pseudouridine (ψ, 5-ribosyl-uracil) and nucleosides methylated on either the base or the 2'-hydroxyl of the ribose. This chapter focuses on the rRNAs of bacteria,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::77f99c995cf4602499f80402213e726d
https://doi.org/10.1128/9781555818142.ch16
https://doi.org/10.1128/9781555818142.ch16