EffectorO: motif-independent prediction of effectors in oomycete genomes using machine learning and lineage-specificity

Autor: Richard W Michelmore, Munir Nur, Kelsey J. Wood

Publikováno v: Molecular Plant-Microbe Interactions®.

Oomycete plant pathogens cause a wide variety of diseases, including late blight of potato, sudden oak death, and downy mildews of plants. These pathogens are major contributors to loss in numerous food crops. Oomycetes secrete effector proteins to m

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac502698a27933b4ac619d208cfb34b7
https://doi.org/10.1094/mpmi-11-22-0236-ta

Effector prediction and characterization in the oomycete pathogen Bremia lactucae reveal host-recognized WY domain proteins that lack the canonical RXLR motif

Autor: Kyle Fletcher, Brigitte Maisonneuve, Kelsey J. Wood, Sanye Naqvi, Richard W Michelmore, Tina Khuu, Ayumi Gothberg, Mathieu A. Pel, Juliana Gil, Jennifer Kopetzky, Archana Pandya, Munir Nur, Dasan Gann, Chi Zhang, Kim Lakeman

Publikováno v: PLoS pathogens, vol 16, iss 10
PLoS Pathogens
PLoS Pathogens, Public Library of Science, 2020, 16 (10), pp.e1009012. ⟨10.1371/journal.ppat.1009012⟩
PLoS Pathogens, Vol 16, Iss 10, p e1009012 (2020)

Pathogens that infect plants and animals use a diverse arsenal of effector proteins to suppress the host immune system and promote infection. Identification of effectors in pathogen genomes is foundational to understanding mechanisms of pathogenesis,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbfde6e5ec62869b9a12053e4bebcc42
https://escholarship.org/uc/item/74v1s8hm

Genomic signatures of heterokaryosis in the oomycete pathogen Bremia lactucae

Autor: Joan Wong, Richard W Michelmore, Kyle Fletcher, Kelsey J. Wood, Cayla Tsuchida, Keri A. Cavanaugh, Juliana Gil, Sebastian Reyes-Chin-Wo, Lien Bertier, Lin Zhang, Aubrey Kenefick

Publikováno v: Nature Communications
Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)
Nature communications, vol 10, iss 1

Lettuce downy mildew caused by Bremia lactucae is the most important disease of lettuce globally. This oomycete is highly variable and rapidly overcomes resistance genes and fungicides. The use of multiple read types results in a high-quality, near-c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::965959b13f802f40cf6f0d74f97e85f5
http://europepmc.org/articles/PMC6570648

Social Reversal of Sex-Biased Aggression and Dominance in a Biparental Cichlid Fish (Julidochromis marlieri)

Autor: Albyn Jones, Kelsey J. Wood, Victoria H. Zero, Suzy C. P. Renn

Publikováno v: Ethology. 120:540-550

In biparental species, aggression, dominance, and parental care are typically sexually dimorphic. While behavioral dimorphism is often strongly linked to gonadal sex, the environment—either social or ecological—may also influence sex-biased behav

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::3c7fd80d617f57f6c79981a082fd91b6
https://doi.org/10.1111/eth.12227

Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen Peronospora tabacina

Autor: Lutz Froenicke, Lida Derevnina, Kelsey J. Wood, Sebastian Chin-Wo-Reyes, Richard W Michelmore, Frank N. Martin, Otmar Spring

Publikováno v: Molecular plant-microbe interactions : MPMI. 28(11)

Peronospora tabacina is an obligate biotrophic oomycete that causes blue mold or downy mildew on tobacco (Nicotiana tabacum). It is an economically important disease occurring frequently in tobacco-growing regions worldwide. We sequenced and characte

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::28286f7865370aafa48f74b87c576d28
https://pubmed.ncbi.nlm.nih.gov/26196322