The BioMart community portal: an innovative alternative to large, centralized data repositories

Autor: Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J, Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W, Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J, Dassi, Erik, Di Genova, Alex, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C, Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M, Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K, Hayes, Richard D, Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M, Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W, Dayem Ullah, Abu Z, Wang, Jun, Ware, Doreen

Publikováno v: Nucleic acids research, vol 43, iss W1

The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific org

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d2e5e778071de0392e6ec222b2051a5a
https://escholarship.org/uc/item/5vh4j43w

Information system for phenotype data: trait, trials and genotypes identification and integration

Autor: Pommier, Cyril, Alaux, Michael, Durand, Sophie, Flores, Raphaël-Gauthier, Keliet, Aminah, Kimmel, Erik, Michotey, Célia, Mohellibi, Nacer, Valdenaire, Dorothée, Roumet, Pierre

Publikováno v: 22. Conference Plant and Animal Genome
22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States

International audience

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::5a0de956f56e2f8f6d04915b1868b682
https://hal.inrae.fr/hal-02795958

Fungal species resources: an integrated system for structural and functional genome annotation

Autor: Lapalu, Nicolas, Amselem, Joelle, Brault, Baptiste, Brigitte, Laetitia, Kreplak, Jonathan, ALFAMA-DEPAUW, Françoise, Keliet, Aminah, Kimmel, Erik, Luyten, Isabelle, Reboux, Sebastien, Steinbach, Delphine, Lebrun, Marc-Henri, Quesneville, Hadi

Publikováno v: Journées Jean Chevaugeon 2012
9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP)
9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.81-81
Journées Jean Chevaugeon 2012. 2012; 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Aussois, FRA, 2012-01-16-2012-01-20, 81-81

Session 3 : Génomique des Champignons Poster n°3.3; absent

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::b79442b8db5e8432291f063b2d20ddf9
https://hal.archives-ouvertes.fr/hal-00999954

URGI genome annotation system:an integrated system for structural and functional genome annotation

Autor: Amselem, Joelle, Alaux, Michael, Choisne, Nathalie, Lapalu, Nicolas, Brault, Baptiste, Keliet, Aminah, Kimmel, Erik, Alfama, Françoise, Arnoux, Sandie, Bras, Marc, Brigitte, Laetitia, Inizan, Olivier, Jamilloux, Veronique, Kreplak, Jonathan, Legeai, Fabrice, Luyten, Isabelle, Pommier, Cyril, Reboux, Sebastien, Sidibe-Bocs, Stéphanie, Lebrun, Marc-Henri, Steinbach, Delphine, Quesneville, Hadi, Institut National de la Recherche Agronomique UR 1164 Unité de Recherche Génomique-Info, Institut National de la Recherche Agronomique UMR 1099 Biologie des Organismes et des Populations Appliquée à la Protection des Plantes, Centre de Coopération Internationale en Recherche Agronomique pour le Développement

Publikováno v: 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Paris, FRA, 2011-06-28-2011-07-01

The URGI platform (http://urgi.versailles.inra.fr) develops a genome annotation system dedicated to plants and their pathogens. This Integrated System relies on: (i) pipelines for Transposable Elements annotation (REPET) and gene structural and funct

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1582::2e31b7a32d320b34155e5153ff150c00
http://prodinra.inra.fr/record/46104

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Autor: Smedley D; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK., Haider S; The Weatherall Institute Of Molecular Medicine, University of Oxford, Oxford, OX3 9DS, UK., Durinck S; Genentech, Inc. 1 DNA Way South San Francisco, CA 94080, USA., Pandini L; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Provero P; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Dept of Molecular Biotechnology and Health Sciences University of Turin, Italy., Allen J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Arnaiz O; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris Sud, 1 avenue de la terrasse, 91198 Gif sur Yvette, France., Awedh MH; Department of Electrical and Computer Engineering, Faculty of Engineering, King Abdulaziz University, Jeddah, Saudi Arabia., Baldock R; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Edinburgh, EH4 2XU, UK., Barbiera G; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Bardou P; Sigenae, INRA, Castanet-Tolosan, France., Beck T; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK., Blake A; MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK., Bonierbale M; International Potato Center (CIP), Lima, 1558, Peru., Brookes AJ; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK., Bucci G; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Buetti I; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Burge S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Cabau C; Sigenae, INRA, Castanet-Tolosan, France., Carlson JW; Department of Energy, Joint Genome Institute, Walnut Creek, USA., Chelala C; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK., Chrysostomou C; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK., Cittaro D; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Collin O; IRISA-INRIA, Campus de Beaulieu 35042 Rennes, France., Cordova R; International Potato Center (CIP), Lima, 1558, Peru., Cutts RJ; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK., Dassi E; Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy., Di Genova A; Center for Mathematical Modeling and Center for Genome Regulation, University of Chile, Beauchef 851, 7th floor, Chile., Djari A; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France., Esposito A; Oncology Computational Biology, Pfizer, La Jolla, USA., Estrella H; Oncology Computational Biology, Pfizer, La Jolla, USA., Eyras E; Catalan Institute for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, E-08010 Barcelona, Spain Universitat Pompeu Fabra, Dr Aiguader 88 E-08003 Barcelona, Spain., Fernandez-Banet J; Oncology Computational Biology, Pfizer, La Jolla, USA., Forbes S; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK., Free RC; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK., Fujisawa T; Kasuza DNA Research Institute, Chiba, 292-0818, Japan., Gadaleta E; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK., Garcia-Manteiga JM; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Goodstein D; Department of Energy, Joint Genome Institute, Walnut Creek, USA., Gray K; HUGO Gene Nomenclature Committee (HGNC), European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK., Guerra-Assunção JA; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK., Haggarty B; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Edinburgh, EH4 2XU, UK., Han DJ; Medicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Department of Molecular Medicine and Biopharmaceutical Sciences, Seoul National University, Seoul 151-742, Republic of Korea., Han BW; Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Information Center for Bio-pharmacological Network, Seoul National University, Suwon 443-270, Republic of Korea., Harris T; Ontario Institute for Cancer Research, Toronto, M5G 0A3, Canada., Harshbarger J; RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies (DGT), Kanagawa, 230-0045, Japan., Hastings RK; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK., Hayes RD; Department of Energy, Joint Genome Institute, Walnut Creek, USA., Hoede C; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France., Hu S; School of Dentistry and Dental Research Institute, University of California Los Angeles (UCLA), Los Angeles, CA 90095-1668, USA., Hu ZL; Iowa State Univeristy, USA., Hutchins L; Mouse Genomic Informatics Group, The Jackson Laboratory, Bar Harbor, ME 04609, USA., Kan Z; Oncology Computational Biology, Pfizer, La Jolla, USA., Kawaji H; RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies (DGT), Kanagawa, 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Saitama 351-0198, Japan., Keliet A; INRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France., Kerhornou A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Kim S; Medicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Department of Molecular Medicine and Biopharmaceutical Sciences, Seoul National University, Seoul 151-742, Republic of Korea., Kinsella R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Klopp C; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France., Kong L; Center for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, 100871, P.R. China., Lawson D; VectorBase, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK., Lazarevic D; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Lee JH; Medicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Information Center for Bio-pharmacological Network, Seoul National University, Suwon 443-270, Republic of Korea., Letellier T; INRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France., Li CY; Institute of Molecular Medicine, Peking University, Beijing, China., Lio P; Computer Laboratory, University of Cambridge, Cambridge, CB3 0FD, UK., Liu CJ; Institute of Molecular Medicine, Peking University, Beijing, China., Luo J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Maass A; Center for Mathematical Modeling and Center for Genome Regulation, University of Chile, Beauchef 851, 7th floor, Chile Department of Mathematical Engineering, University of Chile, Av. Beauchef 851, 5th floor, Santiago, Chile., Mariette J; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France., Maurel T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Merella S; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Mohamed AM; Departament of Biochemistry, Faculty of Science for Girls, King Abdulaziz University, Jeddah, Saudi Arabia., Moreews F; Sigenae, INRA, Castanet-Tolosan, France., Nabihoudine I; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France., Ndegwa N; Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, PO Box 281, 17177 Stockholm, Sweden., Noirot C; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France., Perez-Llamas C; Universitat Pompeu Fabra, Dr Aiguader 88 E-08003 Barcelona, Spain., Primig M; Inserm U1085 IRSET, University of Rennes 1, 35042 Rennes, France., Quattrone A; Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy., Quesneville H; INRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France., Rambaldi D; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Reecy J; Iowa State Univeristy, USA., Riba M; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Rosanoff S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Saddiq AA; Department of Biological Sciences, Faculty of Science for Girls, King Abdulaziz University, Jeddah, Saudi Arabia., Salas E; International Potato Center (CIP), Lima, 1558, Peru., Sallou O; IRISA-INRIA, Campus de Beaulieu 35042 Rennes, France., Shepherd R; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK., Simon R; International Potato Center (CIP), Lima, 1558, Peru., Sperling L; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris Sud, 1 avenue de la terrasse, 91198 Gif sur Yvette, France., Spooner W; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA Eagle Genomics Ltd., Babraham Research Campus, Cambridge, CB22 3AT, UK., Staines DM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Steinbach D; INRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France., Stone K; Mouse Genomic Informatics Group, The Jackson Laboratory, Bar Harbor, ME 04609, USA., Stupka E; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy., Teague JW; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK., Dayem Ullah AZ; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK., Wang J; Center for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, 100871, P.R. China., Ware D; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA., Wong-Erasmus M; Human Longevity, Inc. 10835 Road to the Cure 140 San Diego, CA 92121, USA., Youens-Clark K; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA., Zadissa A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Zhang SJ; Institute of Molecular Medicine, Peking University, Beijing, China., Kasprzyk A; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia Arek.Kasprzyk@gmail.com.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2015 Jul 01; Vol. 43 (W1), pp. W589-98. Date of Electronic Publication: 2015 Apr 20.