An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

Autor: Ahouidi, A., Ali, M, Almagro-Garcia, J., Amambua-Ngwa, A., Amaratunga, C., Amato, R., Amenga-Etego, L., Andagalu, B., Anderson, T.J., Andrianaranjaka, V., Apinjoh, T., Ariani, C., Ashley, E.A., Auburn, S., Awandare, G.A., Ba, H., Baraka, V., Barry, A.E., Bejon, P., Bertin, G.I., Boni, M.F., Borrmann, S., Bousema, T., Branch, O., Bull, P.C., Busby, G.B.J., Chookajorn, T., Chotivanich, K., Claessens, A., Conway, D., Craig, A., D'Alessandro, U., Dama, S., Day, N.P., Denis, B., Diakite, M., Djimdé, A., Dolecek, C., Dondorp, A.M., Drakeley, C., Drury, E., Duffy, P., Echeverry, D.F., Egwang, T.G., Erko, B., Fairhurst, R.M., Faiz, A., Fanello, C.A., Fukuda, M.M., Gamboa, D., Ghansah, A., Golassa, L., Goncalves, S., Hamilton, W.L., Harrison, G.L.A., Hart, L. 't, Henrichs, C., Hien, T.T., Hill, C.A., Hodgson, A., Hubbart, C., Imwong, M., Ishengoma, D.S., Jackson, S.A., Jacob, C.G., Jeffery, B., Jeffreys, A.E., Johnson, K.J., Jyothi, D., Kamaliddin, C., Kamau, E., Kekre, M., Kluczynski, K., Kochakarn, T., Konaté, A., Kwiatkowski, D.P., Kyaw, M.P., Lim, P., Lon, C., Loua, K.M., Maïga-Ascofaré, O., Malangone, C., Manske, M., Marfurt, J., Marsh, K., Mayxay, M., Miles, A., Miotto, O., Mobegi, V., Mokuolu, O.A., Montgomery, J., Mueller, I., Newton, P.N., Nguyen, T., Nguyen, T.N.D., Noedl, H., Nosten, F., Noviyanti, R., Nzila, A., Ochola-Oyier, L.I.

Publikováno v: Wellcome Open Research, 6

Contains fulltext : 238195.pdf (Publisher’s version ) (Open Access) MalariaGEN is a data-sharing network that enables groups around the world to work together on the genomic epidemiology of malaria. Here we describe a new release of curated genome

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6a074be31b5a2f37c56a802d7c481a0
https://doi.org/10.12688/wellcomeopenres.16168.2

Genomic epidemiology of Staphylococcus aureus isolated from bloodstream infections in South America during 2019 supports regional surveillance.

Autor: Di Gregorio S; Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina., Vielma J; Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina.; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina., Haim MS; Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina.; Unidad Operativa Centro Nacional de Genómica y Bioinformática, ANLIS Dr. Carlos G. Malbrán, Ciudad Autónoma de Buenos Aires, Argentina., Rago L; Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina., Campos J; Unidad Operativa Centro Nacional de Genómica y Bioinformática, ANLIS Dr. Carlos G. Malbrán, Ciudad Autónoma de Buenos Aires, Argentina., Kekre M; Present address: Tropic Biosciences Ltd, Norwich Research Park, Norwich, UK.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, UK., Abrudan M; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, UK., Famiglietti Á; Laboratorio de Bacteriología Clínica, Hospital de Clínicas José de San Martín, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina., Canigia LF; Hospital Alemán, Ciudad Autónoma de Buenos Aires, Argentina., Rubinstein G; Hospital Privado Regional del Sur, Bariloche, Argentina., Helena von Specht M; Cátedra de Microbiología, Facultad de Ciencias Exactas, Químicas y Naturales, Universidad Nacional de Misiones, Posadas, Argentina., Herrera M; Facultad de Ciencias de la Salud, Universidad Adventista del Plata, Entre Ríos, Argentina., Aro C; Hospital de Niños Dr. Orlando Alassia, Santa Fé, Argentina., Galas M; Pan American Health Organization, Washington, DC, USA., Yarhui NB; Hospital del Niño Manuen Ascencio Villarroel, Cochabamba, Bolivia., Figueiredo A; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.; Programa de Pós-Graduação em Patologia, Faculdade de Medicina, Universidade Federal Fluminense, Niterói, Brazil., Lincopan N; Institute of Biomedical Sciences, Department of Microbiology, Universidade de São Paulo, Sao Pablo, Brazil., Falcon M; Dpto. Bacteriología y Micología, Sección Antimicrobianos, Laboratorio Central de Salud Pública, Asunción, Paraguay.; Present address: Ministerio de Salud Pública y Bienestar Social, Asunción, Paraguay., Guillén R; Instituto de Investigaciones en Ciencias de la Salud, Facultad de Ciencias Químicas, Universidad Nacional de Asunción, Asunción, Paraguay., Camou T; Unidad de Bacteriología, Departamento de Laboratorios de Salud Pública, Ministerio de Salud Pública, Montevideo, Uruguay., Varela G; Cátedra de Bacteriología y Virología, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay., Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, UK., Argimón S; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, UK., Mollerach M; Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina.; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina., On Behalf Of StaphNET-Sa Consortium; Participating centres, South America.

Publikováno v: Microbial genomics [Microb Genom] 2023 May; Vol. 9 (5).

Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria.

Autor: Ikhimiukor OO; Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria., Oaikhena AO; Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria., Afolayan AO; Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria., Fadeyi A; Department of Medical Microbiology and Parasitology, University of Ilorin, Ilorin, Kwara State, Nigeria., Kehinde A; Department of Medical Microbiology and Parasitology, University College Hospital, Ibadan, Oyo State, Nigeria., Ogunleye VO; Department of Medical Microbiology and Parasitology, University College Hospital, Ibadan, Oyo State, Nigeria., Aboderin AO; Department of Medical Microbiology and Parasitology, Obafemi Awolowo University Teaching Hospitals Complex, Ile-Ife, Nigeria., Oduyebo OO; Department of Medical Microbiology and Parasitology, Faculty of Basic Medical Sciences, College of Medicine, University of Lagos, Lagos, Nigeria., Elikwu CJ; Department of Medical Microbiology, School of Basic Clinical Sciences, Benjamin Carson College of Health and Medical Sciences, Babcock University & Teaching Hospital, Ilishan-Remo, Ogun State, Nigeria., Odih EE; Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria., Komolafe I; Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria., Argimón S; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom., Egwuenu A; Nigeria Centre for Disease Control, Jabi, Abuja, Nigeria., Adebiyi I; Department of Medical Microbiology and Parasitology, University College Hospital, Ibadan, Oyo State, Nigeria., Sadare OA; Department of Medical Microbiology, School of Basic Clinical Sciences, Benjamin Carson College of Health and Medical Sciences, Babcock University & Teaching Hospital, Ilishan-Remo, Ogun State, Nigeria., Okwor T; Nigeria Centre for Disease Control, Jabi, Abuja, Nigeria., Kekre M; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom., Underwood A; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom., Ihekweazu C; Nigeria Centre for Disease Control, Jabi, Abuja, Nigeria., Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom., Okeke IN; Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria.

Publikováno v: PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2022 Aug 26; Vol. 16 (8), pp. e0010716. Date of Electronic Publication: 2022 Aug 26 (Print Publication: 2022).

Circulation of Third-Generation Cephalosporin Resistant Salmonella Typhi in Mumbai, India.

Autor: Argimón S; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom., Nagaraj G; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Shamanna V; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Sravani D; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Vasanth AK; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Prasanna A; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Poojary A; Department of Pathology and Microbiology, Breach Candy Hospital Trust, Mumbai, India., Bari AK; Department of Pathology and Microbiology, Breach Candy Hospital Trust, Mumbai, India., Underwood A; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom., Kekre M; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom., Baker S; Cambridge Institute of Therapeutic Immunology & Infectious Disease, Department of Medicine, University of Cambridge, Cambridge, United Kingdom., Aanensen DM; Centre for Genomic Pathogen Surveillance, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Old Road Campus, Oxford, United Kingdom., Lingegowda RK; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India.

Publikováno v: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America [Clin Infect Dis] 2022 Jul 06; Vol. 74 (12), pp. 2234-2237.

Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.

Autor: Carlos CC; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Masim MAL; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Lagrada ML; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Gayeta JM; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Macaranas PKV; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Sia SB; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Facun MAM; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Palarca JFC; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Olorosa AM; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Cueno GAC; Research Institute for Tropic al Medicine, Muntinlupa, the Philippines., Abrudan M; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, UK., Abudahab K; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, UK., Argimón S; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, UK., Kekre M; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, UK., Underwood A; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Brigham and Women's Hospital, Boston, MA, USA., Stelling J; Brigham and Women's Hospital, Boston, MA, USA., Aanensen DM; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Centre for Genomic Pathogen Surveillance, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK.

Publikováno v: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America [Clin Infect Dis] 2021 Dec 01; Vol. 73 (Suppl_4), pp. S316-S324.