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Akademický článek

Phospho-RNA sequencing with circAID-p-seq.

Autor: Del Piano A; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy.; Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Kecman T; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy., Schmid M; Genexa AG, Zurich, Switzerland., Barbieri R; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy., Brocchieri L; TB-Seq, Inc., 458 Carlton Court, Ste H, South San Francisco, CA 94080, USA., Tornaletti S; TB-Seq, Inc., 458 Carlton Court, Ste H, South San Francisco, CA 94080, USA., Firrito C; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy., Minati L; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy., Bernabo P; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy., Signoria I; Institute of Biophysics, Unit at Trento, CNR, Via Sommarive, 18 Povo, Italy., Lauria F; Institute of Biophysics, Unit at Trento, CNR, Via Sommarive, 18 Povo, Italy., Gillingwater TH; Edinburgh Medical School: Biomedical Sciences & Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh, Edinburgh, UK., Viero G; Institute of Biophysics, Unit at Trento, CNR, Via Sommarive, 18 Povo, Italy., Clamer M; IMMAGINA BioTechnology S.r.l, Via Sommarive 18, Povo, Italy.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2022 Feb 28; Vol. 50 (4), pp. e23.

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Akademický článek

Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription.

Autor: Heo DH; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Kuś K; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Grzechnik P; School of Biosciences, College of Life & Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK., Tan-Wong SM; Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK., Birot A; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Kecman T; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Nielsen S; Centre for Bacterial Cell Biology, Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Baddiley-Clark Building, Richardson Road, Newcastle upon Tyne NE2 4AX, UK., Zenkin N; Centre for Bacterial Cell Biology, Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Baddiley-Clark Building, Richardson Road, Newcastle upon Tyne NE2 4AX, UK., Vasiljeva L; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK. Electronic address: lidia.vasilieva@bioch.ox.ac.uk.

Publikováno v: Cell reports [Cell Rep] 2021 Sep 07; Vol. 36 (10), pp. 109671.

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Akademický článek

System-wide analyses of the fission yeast poly(A) ⁺ RNA interactome reveal insights into organization and function of RNA-protein complexes.

Autor: Kilchert C; Institut für Biochemie, Justus-Liebig-Universität Gießen, 35392 Gießen, Germany., Kecman T; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom., Priest E; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom., Hester S; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom., Aydin E; Institut für Biochemie, Justus-Liebig-Universität Gießen, 35392 Gießen, Germany., Kus K; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom., Rossbach O; Institut für Biochemie, Justus-Liebig-Universität Gießen, 35392 Gießen, Germany., Castello A; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom., Mohammed S; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom.; Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, United Kingdom., Vasiljeva L; Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom.

Publikováno v: Genome research [Genome Res] 2020 Jul; Vol. 30 (7), pp. 1012-1026. Date of Electronic Publication: 2020 Jun 18.

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Akademický článek

Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination.

Autor: Kecman T; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Kuś K; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Heo DH; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Duckett K; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Birot A; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Liberatori S; Department of Chemistry, University of Oxford, Oxford OX1 3QU, UK., Mohammed S; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK; Department of Chemistry, University of Oxford, Oxford OX1 3QU, UK., Geis-Asteggiante L; Department of Chemistry, University of Oxford, Oxford OX1 3QU, UK., Robinson CV; Department of Chemistry, University of Oxford, Oxford OX1 3QU, UK., Vasiljeva L; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK. Electronic address: lidia.vasilieva@bioch.ox.ac.uk.

Publikováno v: Cell reports [Cell Rep] 2018 Oct 02; Vol. 25 (1), pp. 259-269.e5.

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Akademický článek

Profiling RNA Polymerase II Phosphorylation Genome-Wide in Fission Yeast.

Autor: Kecman T; Department of Biochemistry, University of Oxford, Oxford, United Kingdom., Heo DH; Department of Biochemistry, University of Oxford, Oxford, United Kingdom., Vasiljeva L; Department of Biochemistry, University of Oxford, Oxford, United Kingdom. Electronic address: lidia.vasilieva@bioch.ox.ac.uk.

Publikováno v: Methods in enzymology [Methods Enzymol] 2018; Vol. 612, pp. 489-504. Date of Electronic Publication: 2018 Aug 23.

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Akademický článek

The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA.

Autor: Wittmann S; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Renner M; Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK., Watts BR; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Adams O; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Huseyin M; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Baejen C; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany., El Omari K; Diamond Light Source Ltd, Harwell Science &Innovation Campus, Didcot OX11 0DE, UK., Kilchert C; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Heo DH; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Kecman T; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Cramer P; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany., Grimes JM; Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.; Diamond Light Source Ltd, Harwell Science &Innovation Campus, Didcot OX11 0DE, UK., Vasiljeva L; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.

Publikováno v: Nature communications [Nat Commun] 2017 Apr 03; Vol. 8, pp. 14861. Date of Electronic Publication: 2017 Apr 03.

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