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Additional file 1: Table S1. of Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Autor: Waldemarson, Sofia, Kurbasic, Emila, Krogh, Morten, Cifani, Paolo, BerggĂĽrd, Tord, Ă Ke Borg, James, Peter

The clinical parameters of the tumors used in the 2D-DIGE analysis are given in this table: Sex, tumor type, BRCA type, age at diagnosis, ER status, PgR status, RNA subtype classification according to Hu, SĂśrlie, and PAM50 and the associated gel n

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Additional file 6: Figure S1. of Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Autor: Waldemarson, Sofia, Kurbasic, Emila, Krogh, Morten, Cifani, Paolo, BerggĂĽrd, Tord, Ă Ke Borg, James, Peter

The ROC area curves for all classifiers and pairwise comparisons between each of the three gene classifications (SĂśrlie, PAM50, and Hu) and SRM-based peptide assays for each of the five subclasses; basal, normal, Her2, luminal A and luminal B. (PD

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Additional file 4: Table S4. of Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Autor: Waldemarson, Sofia, Kurbasic, Emila, Krogh, Morten, Cifani, Paolo, BerggĂĽrd, Tord, Ă Ke Borg, James, Peter

The selected reaction monitoring (SRM) assays set up after refinement, containing 190 proteins represented by 253 peptides. The protein names, peptide sequences, Q1/Q3 transitions, collision energy, and fragment being monitored are given. (PDF 297 kb

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Transcriptional adaptation of neuroblastoma cells to hypoxia

Autor: Marie Ovenberger, Ke Borg, Erik Fredlund, Sven Påhlman

Publikováno v: Biochemical and Biophysical Research Communications. 366:1054-1060

Low oxygen pressure (hypoxia) is a physiological condition that has been linked to tumor progression and increased malignancy in several cancer forms. Cells of the childhood neoplasm neuroblastoma respond to hypoxia by attaining a lower grade of diff

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https://doi.org/10.1016/j.bbrc.2007.12.074

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Gain of chromosomal region 20q and loss of 18 discriminates between Lynch syndrome and familial colorectal cancer

Autor: Mev Dominguez-Valentin, Ke Borg, Eva Rambech, Christina Therkildsen, Anja Nissen, Göran Jönsson, Britta Halvarsson, Mef Nilbert, Inge Bernstein

Publikováno v: European journal of cancer (Oxford, England : 1990). 49(6)

Lynch syndrome and familial colorectal cancer type X, FCCTX, represent the two predominant colorectal cancer syndromes. Whereas Lynch syndrome is clinically and genetically well defined, the genetic cause of FCCTX is unknown and genomic differences b

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https://pubmed.ncbi.nlm.nih.gov/23245329

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