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Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.

Autor: Bryce-Smith S; UCL Queen Square Motor Neuron Disease Centre, Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, UCL, London, UK., Burri D; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Gazzara MR; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, USA., Herrmann CJ; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Danecka W; Institute for Cell Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom., Fitzsimmons CM; Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA., Wan YK; Genome Institute of Singapore, Buona Vista, Singapore.; National University of Singapore, Kent Ridge, Singapore., Zhuang F; Department of Computer and Information Science, School of Engineering, University of Pennsylvania, Philadelphia, USA., Fansler MM; Tri-Institutional Program in Computational Biology and Medicine, Weill Cornell GraduateStudies, New York, NY, USA.; Cancer Biology and Genetics, Sloan-Kettering Institute, MSKCC, New York, NY, USA., Fernández JM; Barcelona Supercomputing Center, Barcelona, Spain.; Spanish National Bioinformatics Institute (INB/ELIXIR-ES)., Ferret M; Barcelona Supercomputing Center, Barcelona, Spain.; Spanish National Bioinformatics Institute (INB/ELIXIR-ES)., Gonzalez-Uriarte A; Barcelona Supercomputing Center, Barcelona, Spain.; Spanish National Bioinformatics Institute (INB/ELIXIR-ES)., Haynes S; Institute for Cell Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom., Herdman C; Department of Neurobiology, University of Utah, Utah, USA., Kanitz A; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Katsantoni M; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Marini F; Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI) - UniversityMedical Center of the Johannes Gutenberg, University Mainz, Germany., McDonnel E; Leeds Institute for Data Analytics, School of Molecular and Cellular Biology, University of Leeds, United Kingdom., Nicolet B; Department of Hematopoiesis, Sanquin Research, Landsteiner Laboratory, AmsterdamUMC, University of Amsterdam, and Oncode Institute, Amsterdam, The Netherlands., Poon CL; Weill Cornell Medicine, New York, NY, USA., Rot G; Swiss Institute of Bioinformatics, Lausanne, Switzerland.; Institute of Molecular Life Sciences, Zurich, Switzerland., Schärfen L; Department of Molecular Biophysics & Biochemistry, Yale University, New Haven CT, USA., Wu PJ; Center for Plant Molecular Biology (ZMBP), University of Tübingen, Germany., Yoon Y; Department of Microbiology and Molecular Genetics, School of Medicine, University of California Irvine, Irvine, California, USA., Barash Y; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, USA.; Department of Computer and Information Science, School of Engineering, University of Pennsylvania, Philadelphia, USA., Zavolan M; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jun 26. Date of Electronic Publication: 2023 Jun 26.