Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Katherine I. Fisher-Aylor"'
Autor:
Kenneth McCue, Manoj P. Samanta, Angelike Stathopoulos, Leslie Dunipace, Katherine I. Fisher-Aylor, Lucy Zeng, Anil Ozdemir, Shirley Pepke, Nobuo Ogawa, Barbara J. Wold
Publikováno v:
Genome Research. 21:566-577
Cis-regulatory modules (CRMs) function by binding sequence specific transcription factors, but the relationship between in vivo physical binding and the regulatory capacity of factor-bound DNA elements remains uncertain. We investigate this relations
Autor:
Ting Wang, Matthew D. Rasmussen, Dana N. Levasseur, Thomas A. Reh, Fidencio Neri, Tanya Kutyavin, Peter J. Good, Katrina Learned, Kate R. Rosenbloom, Lei Hoon See, Cedric Notredame, Ross C. Hardison, Chris Zaleski, Gerd A. Blobel, Dmitri D. Pervouchine, Shane Neph, Ali Mortazavi, Tamer Kahveci, Arthur I. Skoultchi, Peter J. Sabo, Jorg Drenkow, Alex Reynolds, Rebecca F. Lowdon, Marella F. T. R. de Bruijn, John A. Stamatoyannopoulos, Yin Shen, Richard Humbert, Anthony Kirilusha, Sherman M. Weissman, Roderic Guigó, James Taylor, Paul Flicek, Kristen Lee, Shinny Vong, Xiaoyi Cao, Douglas Dunn, Alessandra Breschi, Elise A. Feingold, Michael A. Beer, Piper M. Treuting, Igor Antoshechkin, Thomas R. Gingeras, Georgi K. Marinov, Tyrone Ryba, Jin Lian, Christine M. Disteche, Javier Herrero, Eric Rynes, Sheng Zhong, Weisheng Wu, Richard Sandstrom, Gilberto DeSalvo, Michael Snyder, Meagan Fastuca, Miguel Pignatelli, Mark Groudine, Sarah Djebali, Nergiz Dogan, Rajinder Kaul, Giovanni Bussotti, Henry Amrhein, Daniel Bates, Matthew S. Wilken, Alexander Dobin, Manolis Kellis, Licia Selleri, Diane Trout, Morgan Diegel, David M. Gilbert, Zhihai Ma, Jeff Vierstra, Xiao Qiao Zhou, Theresa K. Canfield, Venkat S. Malladi, Zhen Ye, Anthony Shafer, Tejaswini Mishra, Yiing Lin, Samantha Kuan, Anshul Kundaje, Thalia Papayannopoulou, Pablo Prieto, Robert E. Thurman, Long Pham, Cricket A. Sloan, Olgert Denas, Kathryn Beal, Erika Giste, Andrea Tanzer, Katherine I. Fisher-Aylor, Shin Lin, M. A. Bender, Stuart H. Orkin, Carrie A. Davis, Benjamin D. Pope, Rachel Byron, Srikanta Gosh, Beatriz Lacerda de Sousa, R. Scott Hansen, Brian A. Williams, Yong Cheng, Kanwei Li, Dongwon Lee, Yanli Wang, Evan E. Eichler, Camden Jansen, Feng Yue, Deepti Jain, Miaohua Zhang, David McCleary, W. James Kent, Melissa S. Cline, Kai Hsin Chang, Leslie B. Adams, Robert S. Harris, Ghia Euskirchen, Christapher S. Morrissey, Alexander Y. Rudensky, Philip Cayting, Drew T. Erickson, Eric Haugen, Michael J. Pazin, Vanessa M. Kirkup, Yi-Chieh Wu, Trupti Kawli, Mukul S. Bansal, Cheryl A. Keller, Lee Edsall, Robert M. Samstein, Bing Ren, Miguel Santos, Steven Z. Josefowicz, Barbara J. Wold, Julien Lagarde, Alan P. Boyle, Mitchell J. Weiss, Audra K. Johnson
Publikováno v:
PMC
Nature
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature
Recercat. Dipósit de la Recerca de Catalunya
instname
The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To gain greater insights into both shared and species-speci
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6f145cfce45bc7081d45dad46f8b765
http://hdl.handle.net/1721.1/100777
http://hdl.handle.net/1721.1/100777
Autor:
Youngsook L. Jung, Marc D. Perry, Michael M. Hoffman, Joel Rozowsky, Florencia Pauli, Tao Liu, Matthew Slattery, Yiwen Chen, Qiang Li, Michael Snyder, Debasish Raha, Noam Shoresh, Anshul Kundaje, Katherine I. Fisher-Aylor, Gilberto DeSalvo, John A. Stamatoyannopoulos, Charles B. Epstein, Arend Sidow, Jason Gertz, Stephen G. Landt, Pouya Kheradpour, X. Shirley Liu, Manolis Kellis, Peggy J. Farnham, Ghia Euskirchen, Peter V. Kharchenko, Michael Y. Tolstorukov, Lijia Ma, Jason D. Lieb, Subhradip Karmakar, Aleksandar Milosavljevic, James B. Brown, Mark Gerstein, Philip Cayting, Timothy E. Reddy, Richard M. Myers, Peter J. Bickel, Alexander J. Hartemink, Michael J. Pazin, Peter J. Park, Barbara J. Wold, Kevin P. White, Georgi K. Marinov, Bradley E. Bernstein, Vishwanath R. Iyer, Simon Xi, Serafim Batzoglou
Publikováno v:
Genome Research
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq) has become a valuable and widely used approach for mapping the genomic location of transcription-factor binding and histone modifications in living cells. Desp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5616e0d5640a45f356b2f95f7da55246
https://resolver.caltech.edu/CaltechAUTHORS:20120927-133114530
https://resolver.caltech.edu/CaltechAUTHORS:20120927-133114530
Autor:
David M. Gilbert, A Sandra Stehling, Zhihai Ma, Barbara J. Wold, Sonali Jha, Theresa K. Canfield, Julien Lagarde, Vanessa M. Kirkup, W. James Kent, Olgert Denas, M. A. Bender, Erica Giste, Mark Groudine, Yong Cheng, Sarah Djebali, Tyrone Ryba, Marta Byrska-Bishop, Jin Lian, Zhen Ye, Philip Cayting, Michael Snyder, Cheryl A. Keller, Alexander Dobin, Anthony Kiralusha, Tejaswini Mishra, Gayathri Balasundaram, Wulan Deng, Gaurav Jain, Ross C. Hardison, Michael J. Pazin, Stephen G. Landt, Takayo Sasaki, Mia Zhang, Manoj Hariharan, Job Dekker, Peter J. Sabo, Diane Trout, Bing Ren, Mitchell J. Weiss, Audra K. Johnson, Sherman M. Weissman, Deepti Jain, Venkat S. Malladi, Huaien Wang, David McCleary, Melissa S. Cline, Robert E. Thurman, Weisheng Wu, Samantha Kuan, Gregory E. Crawford, Yin Shen, Daniel Blankenberg, Wei Lin, Thomas R. Gingeras, Vaughan Roach, Roderic Guigó, James Taylor, Rajinder Kaul, Gilberto DeSalvo, Henry Amrhein, Carrie A. Davis, Lee Edsall, Amartya Sanyal, Katherine I. Fisher-Aylor, Feng Yue, Ali Mortazavi, Brian A. Williams, Gerd A. Blobel, Rebecca F. Lowdon, Chris Zaleski, Bryan R. Lajoie, John A. Stamatoyannopoulos, Peter J. Good, Katrina Learned, Christopher T. Morrissey, Georgi K. Marinov, Kaun-Bei Chen, Richard Sandstrom, Meagan Fastuca, Elise A. Feingold, Kate R. Rosenbloom, Max Pimkin, Leslie B Adams, Chenghai Xue, Rachel Byron, Swathi Ashok Kumar
Publikováno v:
Genome Biology
Recercat. Dipósit de la Recerca de Catalunya
instname
Recercat. Dipósit de la Recerca de Catalunya
instname
To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse geno
Autor:
Steve Landt, Yuriy L. Orlov, Debasish Raha, Huaien Wang, Su Qin Peh, Chin Thing Ong, Barbara J. Wold, Guoliang Li, Xiaoan Ruan, Meizhen Zheng, Joanne Lim, Zhizhuo Zhang, Kuljeet Singh Sandhu, Wing-Kin Sung, Michael Snyder, Fabianus Hendriyan Mulawadi, Jingyao Zhang, Edison T. Liu, Thomas R. Gingeras, Edwin Cheung, Hui Shan Sim, Melissa J. Fullwood, Chia-Lin Wei, Raymond K. Auerbach, Yufen Goh, Yi Sun, Mark Gerstein, Ghia Euskirchen, Ali Mortazavi, Ping Wang, Weihong Ge, Carrie A. Davis, Yijun Ruan, Huay Mei Poh, Shuzhen Hong, Katherine I. Fisher-Aylor
SummaryHigher-order chromosomal organization for transcription regulation is poorly understood in eukaryotes. Using genome-wide Chromatin Interaction Analysis with Paired-End-Tag sequencing (ChIA-PET), we mapped long-range chromatin interactions asso
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ecd3e349ea68626dacd429773db41694
https://resolver.caltech.edu/CaltechAUTHORS:20120224-130228176
https://resolver.caltech.edu/CaltechAUTHORS:20120224-130228176
Autor:
Robert E. Welikson, Deri Helterline, Phillip W. L. Tai, Stephen D. Hauschka, Catherine L. Smith, Barbara J. Wold, Charis L. Himeda, Katherine I. Fisher-Aylor, John C. Angello, Alexandra P. MacKenzie
Publikováno v:
Skeletal Muscle
Skeletal Muscle, Vol 1, Iss 1, p 25 (2011)
Skeletal Muscle, Vol 1, Iss 1, p 25 (2011)
BackgroundHundreds of genes, including muscle creatine kinase (MCK), are differentially expressed in fast- and slow-twitch muscle fibers, but the fiber type-specific regulatory mechanisms are not well understood.ResultsModulatory region 1 (MR1) is a