Výsledky vyhledávání - "Katherine C H Amrine"

Akademický článek

Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis.

Autor: Katherine C H Amrine, Barbara Blanco-Ulate, Dario Cantu

Publikováno v: PLoS ONE, Vol 10, Iss 3, p e0118731 (2015)

Intricate signal networks and transcriptional regulators translate the recognition of pathogens into defense responses. In this study, we carried out a gene co-expression analysis of all currently publicly available microarray data, which were genera

Externí odkaz: https://doaj.org/article/c4ece8d685954c60bb4c46a1a910d14a

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Akademický článek

Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts

Autor: Barbara eBlanco-Ulate, Abraham eMorales-Cruz, Katherine C H Amrine, John Marcus Labavitch, Ann ePowell, Dario eCantu

Publikováno v: Frontiers in Plant Science, Vol 5 (2014)

Cell walls are barriers that impair colonization of host tissues, but also are important reservoirs of energy-rich sugars. Growing hyphae of necrotrophic fungal pathogens, such as Botrytis cinerea (Botrytis, henceforth), secrete enzymes that disassem

Externí odkaz: https://doaj.org/article/c9a78897006a4f90b6b54e145ab19c8e

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Akademický článek

tRNA signatures reveal a polyphyletic origin of SAR11 strains among alphaproteobacteria.

Autor: Katherine C H Amrine, Wesley D Swingley, David H Ardell

Publikováno v: PLoS Computational Biology, Vol 10, Iss 2, p e1003454 (2014)

Molecular phylogenetics and phylogenomics are subject to noise from horizontal gene transfer (HGT) and bias from convergence in macromolecular compositions. Extensive variation in size, structure and base composition of alphaproteobacterial genomes h

Externí odkaz: https://doaj.org/article/c164ee64e4f64689bfe4086374a06188

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Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

Autor: Daniel P. Lawrence, Renaud Travadon, Kendra Baumgartner, Abraham Morales-Cruz, Dario Cantu, Barbara Blanco-Ulate, Katherine C. H. Amrine, Philippe E. Rolshausen

Publikováno v: BMC genomics, vol 16, iss 1
Morales-Cruz, A; Amrine, KC; Blanco-Ulate, B; Lawrence, DP; Travadon, R; Rolshausen, PE; et al.(2015). Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. BMC Genomics, 16(1). doi: 10.1186/s12864-015-1624-z. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/51p78604
BMC Genomics
Morales-Cruz, A; Amrine, KCH; Blanco-Ulate, B; Lawrence, DP; Travadon, R; Rolshausen, PE; et al.(2015). Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. BMC Genomics. doi: 10.1186/s12864-015-1624-z. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/5wz3r53p

Background Trunk diseases threaten the longevity and productivity of grapevines in all viticulture production systems. They are caused by distantly-related fungi that form chronic wood infections. Variation in wood-decay abilities and production of p

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44e1f11a3c4c9fadd845a40380520e87
https://escholarship.org/uc/item/51p78604

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Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis

Autor: Dario Cantu, Barbara Blanco-Ulate, Katherine C. H. Amrine

Publikováno v: PLoS ONE, Vol 10, Iss 3, p e0118731 (2015)
PLoS ONE
PloS one, vol 10, iss 3
Amrine, KCH; Blanco-Ulate, B; & Cantu, D. (2015). Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis. PLoS ONE, 10(3). doi: 10.1371/journal.pone.0118731. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/5r31g95t

© 2015 Amrine et al. Intricate signal networks and transcriptional regulators translate the recognition of pathogens into defense responses. In this study, we carried out a gene co-expression analysis of all currently publicly available microarray d

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8609427fd87949fda1a604b03979a7fa
http://europepmc.org/articles/PMC4346582?pdf=render

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Comparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew

Autor: Dario Cantu, Laura Jones, D. Pap, Barbara Blanco-Ulate, Katherine C. H. Amrine, Summaira Riaz, Rosa Figueroa-Balderas, M. A. Walker

Publikováno v: Horticulture research, vol 2, iss 1
Amrine, KCH; Blanco-Ulate, B; Riaz, S; Pap, D; Jones, L; Figueroa-Balderas, R; et al.(2015). Comparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew. Horticulture Research, 2, 15037. doi: 10.1038/hortres.2015.37. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/8f32w7k1
Horticulture Research

© 2015 Nanjing Agricultural University. Grape powdery mildew (PM), caused by the biotrophic ascomycete Erysiphe necator, is a devastating fungal disease that affects most Vitis vinifera cultivars. We have previously identified a panel of V. vinifera

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8cd0a67764ae6dbabeccf64457f6977c
https://escholarship.org/uc/item/8f32w7k1

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Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necator

Autor: Laura Jones, M. Andrew Walker, W. Douglas Gubler, Katherine C. H. Amrine, Summaira Riaz, Brianna McGuire, Dario Cantu, Abraham Morales-Cruz

Publikováno v: BMC genomics, vol 15, iss 1
BMC Genomics

Background Powdery mildew, caused by the obligate biotrophic fungus Erysiphe necator, is an economically important disease of grapevines worldwide. Large quantities of fungicides are used for its control, accelerating the incidence of fungicide-resis

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b7ae43f16dcfcf7059ee59f7f6a2977
https://doi.org/10.1186/1471-2164-15-1081

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Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts

Autor: Dario Cantu, John M. Labavitch, Ann L. T. Powell, Barbara Blanco-Ulate, Abraham Morales-Cruz, Katherine C. H. Amrine

Publikováno v: Frontiers in Plant Science
Frontiers in plant science, vol 5, iss SEP
Frontiers in Plant Science, Vol 5 (2014)
Blanco-Ulate, B; Morales-Cruz, A; Amrine, KCH; Labavitch, JM; Powell, ALT; & Cantu, D. (2014). Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts. Frontiers in Plant Science, 5(SEP). doi: 10.3389/fpls.2014.00435. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/2v65k65k

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c0c0f2218f88158ef4cc8d631ff4776
https://pubmed.ncbi.nlm.nih.gov/25232357

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tRNA signatures reveal a polyphyletic origin of SAR11 strains among alphaproteobacteria

Autor: David H. Ardell, Wesley D. Swingley, Katherine C. H. Amrine

Publikováno v: PLoS computational biology, vol 10, iss 2
PLoS Computational Biology
PLoS Computational Biology, Vol 10, Iss 2, p e1003454 (2014)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7bce152e27cdc010ef9565b630a6795b
https://escholarship.org/uc/item/63n8t5cj

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