Comparative analyses of the Hymenoscyphus fraxineus and Hymenoscyphus albidus genomes reveals potentially adaptive differences in secondary metabolite and transposable element repertoires

Autor: Malin Elfstrand, Jun Chen, Michelle Cleary, Sandra Halecker, Katarina Ihrmark, Magnus Karlsson, Kateryna Davydenko, Jan Stenlid, Marc Stadler, Mikael Brandström Durling

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-15 (2021)

Abstract Background The dieback epidemic decimating common ash (Fraxinus excelsior) in Europe is caused by the invasive fungus Hymenoscyphus fraxineus. In this study we analyzed the genomes of H. fraxineus and H. albidus, its native but, now essentia

Externí odkaz: https://doaj.org/article/b7fbb03de8fa4176a2b0a66c8d13b4ef

Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping

Autor: Martin Broberg, Mukesh Dubey, Man-Hong Sun, Katarina Ihrmark, Hans-Josef Schroers, Shi-Dong Li, Dan Funck Jensen, Mikael Brandström Durling, Magnus Karlsson

Publikováno v: Frontiers in Microbiology, Vol 9 (2018)

There is an increasing importance for using biocontrol agents in combating plant diseases sustainably and in the long term. As large scale genomic sequencing becomes economically viable, the impact of single nucleotide polymorphisms (SNPs) on biocont

Externí odkaz: https://doaj.org/article/5e932c623e1a4881815c31f5202b6408

Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s.s. and Norway Spruce.

Autor: Karl Lundén, Marie Danielsson, Mikael Brandström Durling, Katarina Ihrmark, Miguel Nemesio Gorriz, Jan Stenlid, Frederick O Asiegbu, Malin Elfstrand

Publikováno v: PLoS ONE, Vol 10, Iss 7, p e0131182 (2015)

Heterobasidion annosum sensu lato is a serious pathogen causing root and stem rot to conifers in the northern hemisphere and rendering the timber defective for sawing and pulping. In this study we applied next-generation sequencing to i) identify tra

Externí odkaz: https://doaj.org/article/742a6ff95eb34bc6ba3f8dc95660bef5

Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons

Autor: Katarina Ihrmark, Björn D. Lindahl, Mikael Brandström Durling, Karina E. Clemmensen

Publikováno v: Microbial Environmental Genomics (MEG) ISBN: 9781071628706
Microbial Environmental Genomics (MEG) ISBN: 9781493933679

Fungal species participate in vast numbers of processes in the landscape around us. However, their often cryptic growth, inside various substrates and in highly diverse species assemblages, has been a major obstacle to thorough analysis of fungal com

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c173b64de583d9cceb006fc190d66275
https://doi.org/10.1007/978-1-0716-2871-3_3

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers

Autor: Florian Barbi, Preetisri Baskaran, Björn D. Lindahl, Alan Kuo, Anna Lipzen, Igor V. Grigoriev, Kurt LaButti, Laure Fauchery, Emmanuelle Morin, Chris Daum, Bernard Henrissat, Kerrie Barry, Annegret Kohler, Katarina Ihrmark, Francis Martin

Publikováno v: Environmental microbiology, vol 22, iss 3
Environmental Microbiology
Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 22 (3), pp.1089-1103. ⟨10.1111/1462-2920.14873⟩
Environmental Microbiology, 2019, 22 (3), pp.1089-1103. ⟨10.1111/1462-2920.14873⟩

International audience; Microbial communities interplay with their environment through their functional traits that can be a response or an effect on the environment. Here, we explore how a functional trait—the decomposition of organic matter, can

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::09f83e6999936224b4186c7fea1c8e3a
https://escholarship.org/uc/item/8mn549pp