Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Kasthuri J. Venkateswaran"'
Autor:
David C. Danko, Maria A. Sierra, James N. Benardini, Lisa Guan, Jason M. Wood, Nitin Singh, Arman Seuylemezian, Daniel J. Butler, Krista Ryon, Katerina Kuchin, Dmitry Meleshko, Chandrima Bhattacharya, Kasthuri J. Venkateswaran, Christopher E. Mason
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-15 (2021)
Abstract Background Clean rooms of the Space Assembly Facility (SAF) at the Jet Propulsion Laboratory (JPL) at NASA are the final step of spacecraft cleaning and assembly before launching into space. Clean rooms have stringent methods of air-filtrati
Externí odkaz:
https://doaj.org/article/3f3ee5fd9eb04c70a8678dbf757ae911
Autor:
Hazel A Barton, Juan G Giarrizzo, Paula eSuarez, Charles E Robertson, Mark J Broering, Eric D Banks, Parag A Vaishampayan, Kasthuri J Venkateswaran
Publikováno v:
Frontiers in Microbiology, Vol 5 (2014)
The majority of caves are formed within limestone rock and hence our understanding of cave microbiology comes from carbonate-buffered systems. In this paper, we describe the microbial diversity of Roraima Sur Cave, an orthoquartzite (SiO4) cave withi
Externí odkaz:
https://doaj.org/article/c5551e4e022a4712bafba9dd9fd524dd
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 8: Figure S7. Prevalence of species in different categories. Heatmap showing the prevalence (fraction of samples where a taxon is detected) of different taxa across categories. Too many taxa are present to individually name taxa.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c7ebf88b8ab6d57c213bfda2c78a2060
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 6: Figure S5. Rarefaction Analysis. The number of unique species detected in multiple samples of the same type. A) Sample sets appear to reach a maximum suggesting that the majority of species have been fully categorized in each categ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::33c3dc5f6da4e2ef3de8ef72ad1220f5
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file of A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fa8698e0f22891dd7544e8880f878df0
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 1: Table S1. Sample Sets and Categories for JPL Planetary Protection Testing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1bdb6ab1472bdd5bc441db0910803d88
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 4: Figure S3. Comparison of QC Metrics in cases to controls. We detected 24 species across all control samples after initial filtering. Environmental metagenomic samples are qualitatively similar to samples of laboratory contamination
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::20d78a62d0f834dd0e0417c6ef6fd669
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 3: Figure S2. Distribution of QC Metrics. The distributions of various QC metrics for controls and ISO levels. Distributions of QC metrics for non-control samples are largely unaffected by category which suggests good overall quality.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::820b0195b35172906401542c121ee5b4
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 5: Figure S4. Relationship of QC Values to Taxonomic Assignment. A. Total number of reads per sample, note log scale on y-axis. B. Top-Left) Diversity of marker k-mers compared to diversity of identified taxa measured by Shannon’s e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0559065738d368fdcae45818109aff53
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 5: Figure S4. Relationship of QC Values to Taxonomic Assignment. A. Total number of reads per sample, note log scale on y-axis. B. Top-Left) Diversity of marker k-mers compared to diversity of identified taxa measured by Shannon’s e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ee9d77cf180f367fe4c3e5d237d98530