Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Karttunen, M.E.J."'
The anchor of most integral membrane proteins consists of one or several helices spanning the lipid bilayer. The WALP peptide, GWW(LA)$_n$(L)WWA, is a common model helix to study the fundamentals of protein insertion and folding, as well as helix-hel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=narcis______::5bc6fa870e7042a87173953932c88f8b
https://research.tue.nl/nl/publications/2ee61d72-f711-4db6-b8f2-7403c85f16ac
https://research.tue.nl/nl/publications/2ee61d72-f711-4db6-b8f2-7403c85f16ac
Structural effects of small molecules on phospholipid bilayers investigated by molecular simulations
Autor:
Lee, B.W., Faller, R., Sum, A.K., Vattulainen, I., Patra, M., Karttunen, M.E.J., Cummings, P.T., O'Connell, J.P.
Publikováno v:
Fluid Phase Equilibria, 225, 63-68. Elsevier
PPEPPD 2004 Proceedings, 135-140
STARTPAGE=135;ENDPAGE=140;TITLE=PPEPPD 2004 Proceedings
PPEPPD 2004 Proceedings, 135-140
STARTPAGE=135;ENDPAGE=140;TITLE=PPEPPD 2004 Proceedings
We summarize and compare recent Molecular Dynamics simulations on the interactions of dipalmitoylphosphatidylcholine (DPPC) bilayers in the liquid crystalline phase with a number of small molecules including trehalose, a disaccharide of glucose, alco
Autor:
Hug, S., Hunter, G.K., Goldberg, H.A., Karttunen, M.E.J., Landau, D.P., Lewis, S.P., Schüttler, H.-B.
Publikováno v:
Recent Developments in Computer Simulation Studies in Condensed Matter Physics, February 22-26, 2010, Georgia, USA, 51-60
STARTPAGE=51;ENDPAGE=60;TITLE=Recent Developments in Computer Simulation Studies in Condensed Matter Physics, February 22-26, 2010, Georgia, USA
STARTPAGE=51;ENDPAGE=60;TITLE=Recent Developments in Computer Simulation Studies in Condensed Matter Physics, February 22-26, 2010, Georgia, USA
We performed Car-Parrinello Molecular Dynamics (CPMD) simulations of two amino acids, aspartic acid (Asp) and phophoserine (pSer), on a calcium oxalate monohydrate (COM) surface as a model of the interactions of phosphoproteins with biominerals. In o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::38a864c8d8da54021eecbd711a6561e0
https://doi.org/10.1016/j.phpro.2010.08.008
https://doi.org/10.1016/j.phpro.2010.08.008
Publikováno v:
Martinez-Seara, H, Róg, T, Karttunen, M, Vattulainen, I & Reigada, R 2009, ' Why is the sn-2 chain of monounsaturated glycerophospholipids usually unsaturated whereas the sn-1 chain is saturated? Studies of 1-stearoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (SOPC) and 1-oleoyl-2-stearoyl-sn-glycero-3-phosphatidylcholine (OSPC) membranes with and without cholesterol ', Journal of Physical Chemistry B, vol. 113, no. 24, pp. 8347-56 . https://doi.org/10.1021/jp902131b
Journal of Physical Chemistry B, 113(24), 8347-8356. American Chemical Society
Journal of Physical Chemistry B, 113(24), 8347-8356. American Chemical Society
Udgivelsesdato: 2009-Jun-18 Despite the large number of possible glycerol-based phospholipids, biological membranes contain only a small number of them. For example, double bonds in acyl chains are preferably located in the sn-2 chain. The question t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::af900455202419dfd78a0eb4d0745434
https://portal.findresearcher.sdu.dk/da/publications/9a4ba070-14c3-11df-b94c-000ea68e967b
https://portal.findresearcher.sdu.dk/da/publications/9a4ba070-14c3-11df-b94c-000ea68e967b
Publikováno v:
Current Topics in Membranes, 60, 49-89. Academic Press Inc.
Chapter 2. In this review, we discuss current methods and developments in the treatment of electrostatic interactions in biomolecular and soft matter simulations. We review the current ‘work horses’, namely, Ewald summation based methods such the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=narcis______::d527cb62b93e5fb882e8bf9f7be76440
https://research.tue.nl/nl/publications/cd4658fd-d596-4f34-9ea6-ea9fb89b8054
https://research.tue.nl/nl/publications/cd4658fd-d596-4f34-9ea6-ea9fb89b8054
Autor:
Vainio, S., Jansen, Maurice, Koivusalo, M., Róg, T., Karttunen, M.E.J., Vattulainen, I., Ikonen, E.
Publikováno v:
Journal of Biological Chemistry, 281(1), 348-355. American Society for Biochemistry and Molecular Biology Inc.
Desmosterol is an immediate precursor of cholesterol in the Bloch pathway of sterol synthesis and an abundant membrane lipid in specific cell types. The significance of the difference between the two sterols, an additional double bond at position C24
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=narcis______::840b350457b630c41f9bf5ca04977213
https://research.tue.nl/nl/publications/36e33e43-7ddf-45eb-9138-43cdf85dcc5e
https://research.tue.nl/nl/publications/36e33e43-7ddf-45eb-9138-43cdf85dcc5e