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of 2 689
pro vyhledávání: '"Karpen, GH"'
Autor:
Kendek A; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands., Sandron A; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands., Lambooij JP; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands., Colmenares SU; Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, Berkeley, California, USA., Pociunaite SM; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands., Gooijers I; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands., de Groot L; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands., Karpen GH; Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, Berkeley, California, USA.; Division of Biological Sciences and the Environment, Lawrence Berkeley National Laboratory, CA 94720, Berkeley, California, USA., Janssen A; Center for Molecular Medicine, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG, Utrecht, the Netherlands.
Publikováno v:
Nucleic acids research [Nucleic Acids Res] 2024 Sep 11. Date of Electronic Publication: 2024 Sep 11.
Autor:
Rajshekar S; Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, USA., Adame-Arana O; Department of Chemical and Biological Physics, Weizmann Institute of Science, Rehovot, Israel.; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany., Bajpai G; Department of Chemical and Biological Physics, Weizmann Institute of Science, Rehovot, Israel., Lin K; Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, USA., Colmenares S; Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, USA., Safran S; Department of Chemical and Biological Physics, Weizmann Institute of Science, Rehovot, Israel., Karpen GH; Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, USA.; Division of Biological Sciences and the Environment, Lawrence Berkeley National Laboratory, Berkeley, USA.
Publikováno v:
Research square [Res Sq] 2023 Sep 29. Date of Electronic Publication: 2023 Sep 29.
Autor:
Cekanaviciute E; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA 94035, USA., Tran D; Department of Computer Science and Engineering, University of Nevada, Reno, NV 89557, USA., Nguyen H; Department of Computer Science and Engineering, University of Nevada, Reno, NV 89557, USA., Lopez Macha A; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA 94035, USA; Blue Marble Space Institute of Science, 600 1st Avenue, 1st Floor, Seattle, WA 98104, USA., Pariset E; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA 94035, USA; Universities Space Research Association, 615 National Avenue, Mountain View, CA 94043, USA., Langley S; Molecular and Cell Biology, UC Berkeley, Berkeley, CA 94720, USA, and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA., Babbi G; Bologna Biocomputing Group, FABIT, University of Bologna, Via Belmeloro 6, Bologna, Italy., Malkani S; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA 94035, USA; Blue Marble Space Institute of Science, 600 1st Avenue, 1st Floor, Seattle, WA 98104, USA., Penninckx S; Molecular and Cell Biology, UC Berkeley, Berkeley, CA 94720, USA, and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA; Medical Physics Department, Jules Bordet Institute, Université Libre de Bruxelles, 90 Rue Meylemeersch, 1070 Brussels, Belgium., Schisler JC; McAllister Heart Institute and Department of Pharmacology, The University of North Carolina at Chapel Hill, NC 27599, USA., Nguyen T; Department of Computer Science and Engineering, University of Nevada, Reno, NV 89557, USA., Karpen GH; Molecular and Cell Biology, UC Berkeley, Berkeley, CA 94720, USA, and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA., Costes SV; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA 94035, USA. Electronic address: sylvain.v.costes@nasa.gov.
Publikováno v:
Life sciences in space research [Life Sci Space Res (Amst)] 2023 Feb; Vol. 36, pp. 47-58. Date of Electronic Publication: 2022 Jul 28.
Autor:
Lee, YCG, Karpen, GH
Publikováno v:
Lee, YCG; & Karpen, GH. (2017). Pervasive epigenetic effects of drosophila euchromatic transposable elements impact their evolution. eLife, 6. doi: 10.7554/eLife.25762. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/2d62m3qv
© Lee and Karpen. Transposable elements (TEs) are widespread genomic parasites, and their evolution has remained a critical question in evolutionary genomics. Here, we study the relatively unexplored epigenetic impacts of TEs and provide the first g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::32bb0d82eadcc308750927082b3f07ad
http://www.escholarship.org/uc/item/2d62m3qv
http://www.escholarship.org/uc/item/2d62m3qv
Autor:
Altemose N; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA., Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Bzikadze AV; Graduate Program in Bioinformatics and Systems Biology, University of California San Diego, La Jolla, CA, USA., Sidhwani P; Department of Biochemistry, Stanford University, Stanford, CA, USA., Langley SA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA., Caldas GV; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA., Hoyt SJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Uralsky L; Sirius University of Science and Technology, Sochi, Russia.; Vavilov Institute of General Genetics, Moscow, Russia., Ryabov FD; Moscow Polytechnic University, Moscow, Russia., Shew CJ; Genome Center, MIND Institute, and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, Davis, CA, USA., Sauria MEG; Department of Biology, Johns Hopkins University, Baltimore, MD, USA., Borchers M; Stowers Institute for Medical Research, Kansas City, MO, USA., Gershman A; Department of Molecular Biology and Genetics, Johns Hopkins University, Baltimore, MD, USA., Mikheenko A; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia., Shepelev VA; Vavilov Institute of General Genetics, Moscow, Russia., Dvorkina T; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia., Kunyavskaya O; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia., Vollger MR; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., McCartney AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Asri M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Lorig-Roach R; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Shafin K; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Lucas JK; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Aganezov S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Olson D; Department of Computer Science, University of Montana, Missoula, MT. USA., de Lima LG; Stowers Institute for Medical Research, Kansas City, MO, USA., Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Haukness M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Kerpedjiev P; Reservoir Genomics, Oakland, CA., Gusev F; Vavilov Institute of General Genetics, Moscow, Russia., Tigyi K; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Brooks S; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Young A; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Nurk S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Salama SR; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Paten B; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.; Department of Biomolecular Engineering, University of California Santa Cruz, CA, USA., Rogaev EI; Sirius University of Science and Technology, Sochi, Russia.; Vavilov Institute of General Genetics, Moscow, Russia.; Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA.; Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia., Streets A; Department of Bioengineering, University of California, Berkeley, Berkeley, CA, USA.; Chan Zuckerberg Biohub, San Francisco, CA, USA., Karpen GH; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.; BioEngineering and BioMedical Sciences Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Dernburg AF; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA.; Institute for Quantitative Biosciences (QB3), University of California, Berkeley, Berkeley, CA, USA., Sullivan BA; Department of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA., Straight AF; Department of Biochemistry, Stanford University, Stanford, CA, USA., Wheeler TJ; Department of Computer Science, University of Montana, Missoula, MT. USA., Gerton JL; Stowers Institute for Medical Research, Kansas City, MO, USA.; University of Kansas Medical School, Department of Biochemistry and Molecular Biology and Cancer Center, University of Kansas, Kansas City, KS, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Timp W; Department of Molecular Biology and Genetics, Johns Hopkins University, Baltimore, MD, USA.; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Dennis MY; Genome Center, MIND Institute, and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, Davis, CA, USA., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Zook JM; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA., Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Pevzner PA; Department of Computer Science and Engineering, University of California at San Diego, San Diego, CA, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA., Langley CH; Department of Evolution and Ecology, University of California Davis, Davis, CA, USA., Alexandrov IA; Vavilov Institute of General Genetics, Moscow, Russia.; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia.; Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Miga KH; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.; Department of Biomolecular Engineering, University of California Santa Cruz, CA, USA.
Publikováno v:
Science (New York, N.Y.) [Science] 2022 Apr; Vol. 376 (6588), pp. eabl4178. Date of Electronic Publication: 2022 Apr 01.
Autor:
Snijders, AM, Langley, SA, Kim, YM, Brislawn, CJ, Noecker, C, Zink, EM, Fansler, SJ, Casey, CP, Miller, DR, Huang, Y, Karpen, GH, Celniker, SE, Brown, JB, Borenstein, E, Jansson, JK, Metz, TO, Mao, JH
Publikováno v:
Nature microbiology, vol 2, iss 2
Snijders, AM; Langley, SA; Kim, YM; Brislawn, CJ; Noecker, C; Zink, EM; et al.(2016). Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nature Microbiology, 2. doi: 10.1038/nmicrobiol.2016.221. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6cv6n1dn
Snijders, AM; Langley, SA; Kim, YM; Brislawn, CJ; Noecker, C; Zink, EM; et al.(2016). Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nature Microbiology, 2. doi: 10.1038/nmicrobiol.2016.221. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6cv6n1dn
© 2016 Macmillan Publishers Limited, part of Springer Nature. All rights reserved. Although the gut microbiome plays important roles in host physiology, health and disease 1, we lack understanding of the complex interplay between host genetics and e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::c3f96b8fdce6aecd76d05c586c9bc611
https://escholarship.org/uc/item/6cv6n1dn
https://escholarship.org/uc/item/6cv6n1dn
Autor:
Janssen, A, Breuer, GA, Brinkman, EK, Van Der Meulen, AI, Borden, SV, Van Steense, B, Bindra, RS, Larocque, JR, Karpen, GH
Publikováno v:
Janssen, A; Breuer, GA; Brinkman, EK; van der Meulen, AI; Borden, SV; van Steensel, B; et al.(2016). A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin. GENES & DEVELOPMENT, 30(14), 1645-1657. doi: 10.1101/gad.283028.116. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/04c739ct
Genes & development, vol 30, iss 14
Janssen, A; Breuer, GA; Brinkman, EK; Van Der Meulen, AI; Borden, SV; Van Steense, B; et al.(2016). A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and Euchromatin. Genes and Development, 30(14), 1645-1657. doi: 10.1101/gad.283028.116. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/79d2w1rv
Genes & development, vol 30, iss 14
Janssen, A; Breuer, GA; Brinkman, EK; Van Der Meulen, AI; Borden, SV; Van Steense, B; et al.(2016). A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and Euchromatin. Genes and Development, 30(14), 1645-1657. doi: 10.1101/gad.283028.116. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/79d2w1rv
© 2016 Janssen et al. Repair of DNA double-strand breaks (DSBs) must be properly orchestrated in diverse chromatin regions to maintain genome stability. The choice between two main DSB repair pathways, nonhomologous end-joining (NHEJ) and homologous
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::6f57bbedcdfc7677212ded7ec5ef2188
http://www.escholarship.org/uc/item/04c739ct
http://www.escholarship.org/uc/item/04c739ct
Autor:
Guo, Zhengyang1 (AUTHOR), Wang, Shimin1 (AUTHOR), Wang, Yang1 (AUTHOR), Wang, Zi1 (AUTHOR), Ou, Guangshuo1 (AUTHOR) guangshuoou@tsinghua.edu.cn
Publikováno v:
PLoS Genetics. 8/26/2024, Vol. 20 Issue 8, p1-21. 21p.
Autor:
Haseeb, Muhammad A1 (AUTHOR), Bernys, Alana C1,2 (AUTHOR), Dickert, Erin E1,3 (AUTHOR), Bickel, Sharon E1 (AUTHOR) sharon.e.bickel@dartmouth.edu
Publikováno v:
G3: Genes | Genomes | Genetics. Aug2024, Vol. 14 Issue 8, p1-12. 12p.
Autor:
Kasinathan B; Medical Scientist Training Program, University of Washington School of Medicine, Seattle, United States.; Molecular and Cellular Biology Graduate program, University of Washington School of Medicine, Seattle, United States.; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States., Colmenares SU 3rd; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, United States.; Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, United States.; Innovative Genomics Institute, Berkeley, United States., McConnell H; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States., Young JM; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States., Karpen GH; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, United States.; Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, United States.; Innovative Genomics Institute, Berkeley, United States., Malik HS; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.; Howard Hughes Medical Institute, Fred Hutchinson Cancer Research Center, Seattle, United States.
Publikováno v:
ELife [Elife] 2020 Nov 10; Vol. 9. Date of Electronic Publication: 2020 Nov 10.