Zobrazeno 1 - 10
of 98
pro vyhledávání: '"Karoline Faust"'
Publikováno v:
BMC Bioinformatics, Vol 25, Iss 1, Pp 1-24 (2024)
Abstract Background Given a genome-scale metabolic model (GEM) of a microorganism and criteria for optimization, flux balance analysis (FBA) predicts the optimal growth rate and its corresponding flux distribution for a specific medium. FBA has been
Externí odkaz:
https://doaj.org/article/c675c3a1e26d48dc941d21594b0f6b73
Autor:
Yu Gao, Yağmur Şimşek, Emma Gheysen, Tuomas Borman, Yi Li, Leo Lahti, Karoline Faust, Daniel Rios Garza
Publikováno v:
Methods in Ecology and Evolution, Vol 14, Iss 8, Pp 1967-1980 (2023)
Abstract Microbiomes never stop changing. Their compositions and functions are shaped by the complex interplay of intrinsic and extrinsic drivers, such as growth and migration rates, species interactions, available nutrients and environmental conditi
Externí odkaz:
https://doaj.org/article/42326879121947d2a8fbf8b05d9908ad
Autor:
Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust
Publikováno v:
Gut Microbes, Vol 15, Iss 1 (2023)
ABSTRACTSynthetic communities grown in well-controlled conditions are an important tool to decipher the mechanisms driving community dynamics. However, replicate time series of synthetic human gut communities in chemostats are rare, and it is thus st
Externí odkaz:
https://doaj.org/article/cb715b6f14c34d0cb5cc57f46741eed8
Autor:
Aleksandra Iwona Krawczyk, Sam Röttjers, Maria João Coimbra-Dores, Dieter Heylen, Manoj Fonville, Willem Takken, Karoline Faust, Hein Sprong
Publikováno v:
Parasites & Vectors, Vol 15, Iss 1, Pp 1-10 (2022)
Abstract Background Microbial communities can affect disease risk by interfering with the transmission or maintenance of pathogens in blood-feeding arthropods. Here, we investigated whether bacterial communities vary between Ixodes ricinus nymphs whi
Externí odkaz:
https://doaj.org/article/128cf179209748dbbd36f25c67f4216e
Autor:
Aleksandra I. Krawczyk, Lisa Röttjers, Manoj Fonville, Katshuisa Takumi, Willem Takken, Karoline Faust, Hein Sprong
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-15 (2022)
Abstract Background Ixodes ricinus ticks vector pathogens that cause serious health concerns. Like in other arthropods, the microbiome may affect the tick’s biology, with consequences for pathogen transmission. Here, we explored the bacterial commu
Externí odkaz:
https://doaj.org/article/9a12fccd36fe4698a805157f54a353ed
Autor:
Doris Vandeputte, Lindsey De Commer, Raul Y. Tito, Gunter Kathagen, João Sabino, Séverine Vermeire, Karoline Faust, Jeroen Raes
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)
Here, the authors report quantitative daily gut microbiome variation of individual gut bacterial abundances in healthy individuals, linked to changes in transit time and diet, highlighting the potential need for multiple samplings for microbiome targ
Externí odkaz:
https://doaj.org/article/1c5b37cc2b764456905f6fb41e77a1be
Autor:
Ina Maria Deutschmann, Gipsi Lima-Mendez, Anders K. Krabberød, Jeroen Raes, Sergio M. Vallina, Karoline Faust, Ramiro Logares
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-18 (2021)
Abstract Background Ecological interactions among microorganisms are fundamental for ecosystem function, yet they are mostly unknown or poorly understood. High-throughput-omics can indicate microbial interactions through associations across time and
Externí odkaz:
https://doaj.org/article/ffae6cf055f94567a6e77a79dc7e997a
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 6, p e1009396 (2022)
Ecological memory refers to the influence of past events on the response of an ecosystem to exogenous or endogenous changes. Memory has been widely recognized as a key contributor to the dynamics of ecosystems and other complex systems, yet quantitat
Externí odkaz:
https://doaj.org/article/5666c8794b624073874ca0765ae722f3
Autor:
Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A. Gilbert, Karoline Faust, Rob Knight, Janet K. Jansson, Cesar Cardona, Lisa Röttjers, Jianming Xu
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-12 (2020)
Abstract Background Microbial interactions shape the structure and function of microbial communities; microbial co-occurrence networks in specific environments have been widely developed to explore these complex systems, but their interconnection pat
Externí odkaz:
https://doaj.org/article/cb28598113ce4f3f82b03f8944d4685d
Autor:
Leen Beller, Ward Deboutte, Gwen Falony, Sara Vieira-Silva, Raul Yhossef Tito, Mireia Valles-Colomer, Leen Rymenans, Daan Jansen, Lore Van Espen, Maria Ioanna Papadaki, Chenyan Shi, Claude Kwe Yinda, Mark Zeller, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens
Publikováno v:
mBio, Vol 12, Iss 6 (2021)
ABSTRACT Disturbances in the primary colonization of the infant gut can result in lifelong consequences and have been associated with a range of host conditions. Although early-life factors have been shown to affect infant gut microbiota development,
Externí odkaz:
https://doaj.org/article/7df645ea680d48c39a013153faea87ba