Plasma acylcarnitines and amino acids in dyslipidemia: An integrated metabolomics and machine learning approach.

Autor: Etemadi A; Metabolomics and Genomics Research Center, Endocrinology and Metabolism Molecular-Cellular Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran.; Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Hassanzadehkiabi F; Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Mirabolghasemi M; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran., Ahmadi M; Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Dehghanbanadaki H; Diabetes Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Hosseinkhani S; Metabolic Disorders Research Center, Endocrinology and Metabolism Molecular-Cellular Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Bandarian F; Metabolomics and Genomics Research Center, Endocrinology and Metabolism Molecular-Cellular Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Najjar N; Metabolic Disorders Research Center, Endocrinology and Metabolism Molecular-Cellular Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Dilmaghani-Marand A; Non-Communicable Diseases Research Center, Endocrinology and Metabolism Population Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Panahi N; Metabolic Disorders Research Center, Endocrinology and Metabolism Molecular-Cellular Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Negahdari B; Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Mazloomi M; Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Karimi-Jafari MH; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran., Razi F; Metabolomics and Genomics Research Center, Endocrinology and Metabolism Molecular-Cellular Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran., Larijani B; Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran.

Publikováno v: Journal of diabetes and metabolic disorders [J Diabetes Metab Disord] 2024 Feb 24; Vol. 23 (1), pp. 1057-1069. Date of Electronic Publication: 2024 Feb 24 (Print Publication: 2024).

PANDORA v2.0: Benchmarking peptide-MHC II models and software improvements.

Autor: Parizi FM; Medical BioSciences Department, Radboud University Medical Center, Nijmegen, Netherlands.; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran., Marzella DF; Medical BioSciences Department, Radboud University Medical Center, Nijmegen, Netherlands., Ramakrishnan G; Medical BioSciences Department, Radboud University Medical Center, Nijmegen, Netherlands., 't Hoen PAC; Medical BioSciences Department, Radboud University Medical Center, Nijmegen, Netherlands., Karimi-Jafari MH; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran., Xue LC; Medical BioSciences Department, Radboud University Medical Center, Nijmegen, Netherlands.

Publikováno v: Frontiers in immunology [Front Immunol] 2023 Dec 08; Vol. 14, pp. 1285899. Date of Electronic Publication: 2023 Dec 08 (Print Publication: 2023).

Identification of Catechins' Binding Sites in Monomeric A β 42 through Ensemble Docking and MD Simulations.

Autor: Firouzi R; Department of Physical Chemistry, Chemistry and Chemical Engineering Research Center of Iran, Tehran 1496813151, Iran., Sowlati-Hashjin S; Institute of Biomedical Engineering, University of Toronto, Toronto, ON M5S 3G9, Canada., Chávez-García C; Department of Chemistry, The University of Western Ontario, 1151 Richmond Street, London, ON N6A 5B7, Canada.; The Centre of Advanced Materials and Biomaterials Research, The University of Western Ontario, 1151 Richmond Street, London, ON N6A 5B7, Canada., Ashouri M; Department of Physical Chemistry, School of Chemistry, College of Science, University of Tehran, Tehran P.O. Box 14155-6619, Iran., Karimi-Jafari MH; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran P.O. Box 14155-6619, Iran., Karttunen M; Department of Chemistry, The University of Western Ontario, 1151 Richmond Street, London, ON N6A 5B7, Canada.; The Centre of Advanced Materials and Biomaterials Research, The University of Western Ontario, 1151 Richmond Street, London, ON N6A 5B7, Canada.; Department of Physics and Astronomy, The University of Western Ontario, 1151 Richmond Street, London, ON N6A 3K7, Canada.

Publikováno v: International journal of molecular sciences [Int J Mol Sci] 2023 May 03; Vol. 24 (9). Date of Electronic Publication: 2023 May 03.

Metastatic triple negative breast cancer adapts its metabolism to destination tissues while retaining key metabolic signatures.

Autor: Roshanzamir F; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, 6619-14155, Iran.; Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden., Robinson JL; National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41258 Gothenburg, Sweden., Cook D; Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden., Karimi-Jafari MH; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, 6619-14155, Iran., Nielsen J; Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.; BioInnovation Institute, DK-2200 Copenhagen, Denmark.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2022 Aug 30; Vol. 119 (35), pp. e2205456119. Date of Electronic Publication: 2022 Aug 22.

Binder design for targeting SARS-CoV-2 spike protein: An in silico perspective.

Autor: Etemadi A; Medical Biotechnology Department, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Moradi HR; Medical Biotechnology Department, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Mohammadian F; Department of Medical Biotechnology, Faculty of Advanced Medical Sciences, Tabriz University of Medical Sciences, Tabriz, Iran., Karimi-Jafari MH; Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran., Negahdari B; Medical Biotechnology Department, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Asgari Y; Medical Biotechnology Department, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran., Mazloomi M; Medical Biotechnology Department, School of Advanced Technologies in Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran.

Publikováno v: Gene reports [Gene Rep] 2022 Mar; Vol. 26, pp. 101452. Date of Electronic Publication: 2021 Nov 26.