Zobrazeno 1 - 10
of 33
pro vyhledávání: '"Karen M McGinnis"'
Using iRNA-seq analysis to predict gene expression regulatory level and activity in Zea mays tissues
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 12, Iss 6 (2022)
AbstractPlants regulate gene expression at the transcriptional and post-transcriptional levels to produce a variety of functionally diverse cells and tissues that ensure normal growth, development, and environmental response. Although distinct gene e
Externí odkaz:
https://doaj.org/article/56a9d188960d4a7f8ebf4010ffb244b8
Autor:
Susan Boerner, Karen M McGinnis
Publikováno v:
PLoS ONE, Vol 7, Iss 8, p e43047 (2012)
BACKGROUND: Computational analysis of cDNA sequences from multiple organisms suggests that a large portion of transcribed DNA does not code for a functional protein. In mammals, noncoding transcription is abundant, and often results in functional RNA
Externí odkaz:
https://doaj.org/article/fbcfec5b05e04a50802d3e5dc7d2646b
Autor:
Steven R Eichten, Nathanael A Ellis, Irina Makarevitch, Cheng-Ting Yeh, Jonathan I Gent, Lin Guo, Karen M McGinnis, Xiaoyu Zhang, Patrick S Schnable, Matthew W Vaughn, R Kelly Dawe, Nathan M Springer
Publikováno v:
PLoS Genetics, Vol 8, Iss 12, p e1003127 (2012)
Transposable elements (TEs) have the potential to act as controlling elements to influence the expression of genes and are often subject to heterochromatic silencing. The current paradigm suggests that heterochromatic silencing can spread beyond the
Externí odkaz:
https://doaj.org/article/83d8ae08e9d043b3a11e52f0d1084479
Autor:
Susan, Boerner, Karen M, McGinnis
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2372
Based on recent findings, long noncoding (lnc) RNAs represent a potential class of functional molecules within the cell. In this chapter we describe a computational scheme to identify and classify lncRNAs within maize from full-length cDNA sequences
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::a66df0d434a36ff12e61e2c6a84e7a50
https://pubmed.ncbi.nlm.nih.gov/34417756
https://pubmed.ncbi.nlm.nih.gov/34417756
Autor:
Phebe Lemert, Stefania Vendramin, Karen M. McGinnis, Katherine C. Lu, Jason S. Lynn, Thelma F Madzima
Publikováno v:
Frontiers in Plant Science
Frontiers in Plant Science, Vol 12 (2021)
Frontiers in Plant Science, Vol 12 (2021)
Plants respond to abiotic stress stimuli, such as water deprivation, through a hierarchical cascade that includes detection and signaling to mediate transcriptional and physiological changes. The phytohormone abscisic acid (ABA) is well-characterized
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f82007be6fa47166e5b749d65f23343a
http://europepmc.org/articles/PMC8418275
http://europepmc.org/articles/PMC8418275
Autor:
Susan Boerner, Karen M. McGinnis
Publikováno v:
Long Non-Coding RNAs ISBN: 9781071616963
Long Non-Coding RNAs ISBN: 9781493933761
Long Non-Coding RNAs ISBN: 9781493933761
Based on recent findings, long noncoding (lnc) RNAs represent a potential class of functional molecules within the cell. In this chapter we describe a computational scheme to identify and classify lncRNAs within maize from full-length cDNA sequences
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::814983ee9ea66b0f7c4e8f6894babe6f
https://doi.org/10.1007/978-1-0716-1697-0_20
https://doi.org/10.1007/978-1-0716-1697-0_20
Publikováno v:
BMC Plant Biology, Vol 18, Iss 1, Pp 1-14 (2018)
BMC Plant Biology
BMC Plant Biology
Background Transcription factors (TFs) are proteins that can bind to DNA sequences and regulate gene expression. Many TFs are master regulators in cells that contribute to tissue-specific and cell-type-specific gene expression patterns in eukaryotes.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e7a7265e91a15f029fdecc0d7a23294
http://link.springer.com/article/10.1186/s12870-018-1329-y
http://link.springer.com/article/10.1186/s12870-018-1329-y
Publikováno v:
Plant Physiology. 175:568-583
With the emergence of massively parallel sequencing, genomewide expression data production has reached an unprecedented level. This abundance of data has greatly facilitated maize research, but may not be amenable to traditional analysis techniques t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5307475ac35f7216b812031527b44fc8
https://doi.org/10.1104/pp.17.00825
https://doi.org/10.1104/pp.17.00825
Autor:
Peter J. Hermanson, Ji Huang, Shawn M. Kaeppler, Robert B. Meeley, Heidi Rosenbaum, Jennifer Wendt, Daniel Burgess, Jawon Song, Virginia Zaunbrecher, Thelma F. Madzima, Qing Li, Nathan M. Springer, Todd Richmond, Olga N. Danilevskaya, Karen M. McGinnis, Jeffrey A. Jeddeloh, Amy E. Sloan, Steven R. Eichten, Matthew W. Vaughn
Publikováno v:
The Plant Cell. 26:4602-4616
DNA methylation can play important roles in the regulation of transposable elements and genes. A collection of mutant alleles for 11 maize (Zea mays) genes predicted to play roles in controlling DNA methylation were isolated through forward- or rever
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e0560580c71dad453cf7e973e743abf
https://doi.org/10.1105/tpc.114.133140
https://doi.org/10.1105/tpc.114.133140
Epigenetic gene regulation is important for proper development and gene expression in eukaryotes. Maize has a large and complex genome that includes abundant repetitive sequences which are frequently silenced by epigenetic mechanisms, making it an id
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::69283b4eab315905b4ba843861401c5b
https://doi.org/10.1016/bs.ircmb.2016.08.002
https://doi.org/10.1016/bs.ircmb.2016.08.002