Zobrazeno 1 - 10
of 80
pro vyhledávání: '"Karel Sedlar"'
Autor:
Katerina Jureckova, Marketa Nykrynova, Eva Slaninova, Hugo Fleuriot-Blitman, Véronique Amstutz, Kristyna Hermankova, Matej Bezdicek, Katerina Mrazova, Kamila Hrubanova, Manfred Zinn, Stanislav Obruca, Karel Sedlar
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 23, Iss , Pp 2681-2694 (2024)
Purple photosynthetic bacteria (PPB) are versatile microorganisms capable of producing various value-added chemicals, e.g., biopolymers and biofuels. They employ diverse metabolic pathways, allowing them to adapt to various growth conditions and even
Externí odkaz:
https://doaj.org/article/7acfc2e4bee64fea8dac5675237b242c
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 23, Iss , Pp 783-790 (2024)
Computational models of gene regulations help to understand regulatory mechanisms and are extensively used in a wide range of areas, e.g., biotechnology or medicine, with significant benefits. Unfortunately, there are only a few computational gene re
Externí odkaz:
https://doaj.org/article/f1a2388696a843388ededcb246e069b4
Autor:
Petra Patakova, Maryna Vasylkivska, Karel Sedlar, Katerina Jureckova, Matej Bezdicek, Petra Lovecka, Barbora Branska, Petr Kastanek, Karel Krofta
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
BackgroundThis paper brings new information about the genome and phenotypic characteristics of Pantoea agglomerans strain DBM 3797, isolated from fresh Czech hop (Humulus lupulus) in the Saaz hop-growing region. Although P. agglomerans strains are fr
Externí odkaz:
https://doaj.org/article/14de8d50ef6549a7a0f97e3a14335144
Autor:
Jana Musilova, Xenie Kourilova, Kristyna Hermankova, Matej Bezdicek, Anastasiia Ieremenko, Pavel Dvorak, Stanislav Obruca, Karel Sedlar
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 5372-5381 (2023)
Polyhydroxyalkanoates (PHAs) have emerged as an environmentally friendly alternative to conventional polyesters. In this study, we present a comprehensive analysis of the genomic and phenotypic characteristics of three non-model thermophilic bacteria
Externí odkaz:
https://doaj.org/article/b58ae9f8ff8e434594b5e8ae6343b0b9
Autor:
Matej Bezdicek, Marketa Nykrynova, Karel Sedlar, Stanislava Kralova, Jana Hanslikova, Aja Komprdova, Helena Skutkova, Iva Kocmanova, Jiri Mayer, Martina Lengerova
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Routinely used typing methods including MLST, rep-PCR and whole genome sequencing (WGS) are time-consuming, costly, and often low throughput. Here, we describe a novel mini-MLST scheme for Eschericha coli as an alternative method for rapid g
Externí odkaz:
https://doaj.org/article/f40d483413004e129df96d4cdd5a08fe
Autor:
Karel Sedlar, Jan Kolek, Markus Gruber, Katerina Jureckova, Barbora Branska, Gergely Csaba, Maryna Vasylkivska, Ralf Zimmer, Petra Patakova, Ivo Provaznik
Publikováno v:
Biotechnology for Biofuels, Vol 12, Iss 1, Pp 1-16 (2019)
Abstract Background One of the main obstacles preventing solventogenic clostridia from achieving higher yields in biofuel production is the toxicity of produced solvents. Unfortunately, regulatory mechanisms responsible for the shock response are poo
Externí odkaz:
https://doaj.org/article/76bb067df559444f9d17964c94234f27
Autor:
Petra Videnska, Kristyna Smerkova, Barbora Zwinsova, Vlad Popovici, Lenka Micenkova, Karel Sedlar, Eva Budinska
Publikováno v:
Scientific Reports, Vol 9, Iss 1, Pp 1-14 (2019)
Abstract Many studies correlate changes in human gut microbiome with the onset of various diseases, mostly by 16S rRNA gene sequencing. Setting up the optimal sampling and DNA isolation procedures is crucial for robustness and reproducibility of the
Externí odkaz:
https://doaj.org/article/37d469f2166f4732bf37c9877781576e
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 118-126 (2019)
Species delineation based on bacterial genomes is an essential part of the research of prokaryotes. In silico genome-to-genome comparison methods are computationally demanding, but much less tedious and error prone than the wet-lab methods. In this p
Externí odkaz:
https://doaj.org/article/0276337377d940a29b49871a19a11237
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 406-414 (2019)
Bioinformatics may seem to be a scientific field processing primarily large string datasets, as nucleotides and amino acids are represented with dedicated characters. On the other hand, many computational tasks that bioinformatics challenges are math
Externí odkaz:
https://doaj.org/article/bc3bdeae49e9435083bf54efeb2fd278
Autor:
Katerina Jureckova, Hana Raschmanova, Jan Kolek, Maryna Vasylkivska, Barbora Branska, Petra Patakova, Ivo Provaznik, Karel Sedlar
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Gene expression analysis through reverse transcription-quantitative real-time polymerase chain reaction (RT-qPCR) depends on correct data normalization by reference genes with stable expression. Although Clostridium beijerinckii NRRL B-598 is a promi
Externí odkaz:
https://doaj.org/article/cce4764e15d1450fb90c5b1689f1848b