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Neural network modeling of differential binding between wild-type and mutant CTCF reveals putative binding preferences for zinc fingers 1–2.

Autor: Kaplow, Irene M.^1,2 (AUTHOR) ikaplow@cs.stanford.edu, Banerjee, Abhimanyu³ (AUTHOR), Foo, Chuan Sheng^1,4 (AUTHOR) csfoo@cs.stanford.edu

Publikováno v: BMC Genomics. 4/12/2022, Vol. 23 Issue 1, p1-16. 16p.

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A genomic timescale for placental mammal evolution

Autor: Foley, Nicole M, Mason, Victor C, Harris, Andrew J, Bredemeyer, Kevin R, Damas, Joana, Lewin, Harris A, Eizirik, Eduardo, Gatesy, John, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Springer, Mark S, Murphy, William J, Andrews, Gregory, Armstrong, Joel C, Bianchi, Matteo, Birren, Bruce W, Breit, Ana M, Christmas, Matthew J, Clawson, Hiram, Di Palma, Federica, Diekhans, Mark, Dong, Michael X, Fan, Kaili, Fanter, Cornelia, Forsberg-Nilsson, Karin, Garcia, Carlos J, Gazal, Steven, Genereux, Diane P, Goodman, Linda, Grimshaw, Jenna, Halsey, Michaela K, Hickey, Glenn, Hiller, Michael, Hindle, Allyson G, Hubley, Robert M, Hughes, Graham M, Johnson, Jeremy, Juan, David, Kaplow, Irene M, Keough, Kathleen C, Kirilenko, Bogdan, Koepfli, Klaus-Peter, Korstian, Jennifer M, Kowalczyk, Amanda, Kozyrev, Sergey V, Lawler, Alyssa J, Lawless, Colleen, Lehmann, Thomas, Levesque, Danielle L, Li, Xue, Lind, Abigail, Mackay-Smith, Ava, Marinescu, Voichita D, Marques-Bonet, Tomas, Meadows, Jennifer R S, Meyer, Wynn K, Moore, Jill E, Moreira, Lucas R, Moreno-Santillan, Diana D, Morrill, Kathleen M, Muntané, Gerard, Navarro, Arcadi, Nweeia, Martin, Ortmann, Sylvia, Osmanski, Austin, Paten, Benedict, Paulat, Nicole S, Pfenning, Andreas R, Phan, BaDoi N, Pollard, Katherine S, Pratt, Henry E, Ray, David A, Reilly, Steven K, Rosen, Jeb R, Ruf, Irina, Ryan, Louise, Ryder, Oliver A, Sabeti, Pardis C, Schäffer, Daniel E, Serres, Aitor, Shapiro, Beth, Smit, Arian F A, Springer, Mark, Srinivasan, Chaitanya, Steiner, Cynthia, Storer, Jessica M, Sullivan, Kevin A M, Sullivan, Patrick F, Sundström, Elisabeth, Supple, Megan A, Swofford, Ross, Talbot, Joy-El, Teeling, Emma, Turner-Maier, Jason, Valenzuela, Alejandro, Wagner, Franziska, Wallerman, Ola, Wang, Chao, Wang, Juehan, Weng, Zhiping, Wilder, Aryn P, Wirthlin, Morgan E, Xue, James R, Zhang, Xiaomeng

The precise pattern and timing of speciation events that gave rise to all living placental mammals remain controversial. We provide a comprehensive phylogenetic analysis of genetic variation across an alignment of 241 placental mammal genome assembli

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::84e495019d7602fc7ea6a7a0783dd61d

Additional file 1 of Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin

Autor: Kaplow, Irene M., Schäffer, Daniel E., Wirthlin, Morgan E., Lawler, Alyssa J., Brown, Ashley R., Kleyman, Michael, Pfenning, Andreas R.

Additional file 1.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77a5425d1f562287ddfa0a9ef8d6bd0c