Lipopeptide antibiotics disrupt interactions of undecaprenyl phosphate with UptA.

Autor: Oluwole AO; Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom.; The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, United Kingdom., Kalmankar NV; Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom.; The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, United Kingdom., Guida M; The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, United Kingdom.; Department of Chemistry and Technologies of Drug, Sapienza University of Rome, Rome 00185, Italy., Bennett JL; Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom.; The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, United Kingdom., Poce G; Department of Chemistry and Technologies of Drug, Sapienza University of Rome, Rome 00185, Italy., Bolla JR; The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, United Kingdom.; Department of Biology, University of Oxford, Oxford OX1 3RB, United Kingdom., Robinson CV; Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom.; The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, United Kingdom.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Oct 08; Vol. 121 (41), pp. e2408315121. Date of Electronic Publication: 2024 Oct 03.

Infrared Multiphoton Dissociation Enables Top-Down Characterization of Membrane Protein Complexes and G Protein-Coupled Receptors.

Autor: Lutomski CA; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.; Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, Oxford, OX1 3QU, UK., El-Baba TJ; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.; Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, Oxford, OX1 3QU, UK., Hinkle JD; Thermo Fisher Scientific, San Jose, CA 95134, USA., Liko I; OMass Therapeutics, Oxford, OX4 2GX, UK., Bennett JL; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.; Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, Oxford, OX1 3QU, UK., Kalmankar NV; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.; Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, Oxford, OX1 3QU, UK., Dolan A; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.; Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, Oxford, OX1 3QU, UK., Kirschbaum C; Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.; Fritz Haber Institute of the Max Planck Society, Berlin, 14195, Germany., Greis K; Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.; Fritz Haber Institute of the Max Planck Society, Berlin, 14195, Germany., Urner LH; Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.; Fritz Haber Institute of the Max Planck Society, Berlin, 14195, Germany.; Department of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, 44227, Germany., Kapoor P; OMass Therapeutics, Oxford, OX4 2GX, UK., Yen HY; OMass Therapeutics, Oxford, OX4 2GX, UK.; Institute of Biological Chemistry, Academia Sinica, Taipei, 115, Taiwan., Pagel K; Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.; Fritz Haber Institute of the Max Planck Society, Berlin, 14195, Germany., Mullen C; Thermo Fisher Scientific, San Jose, CA 95134, USA., Syka JEP; Thermo Fisher Scientific, San Jose, CA 95134, USA., Robinson CV; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.; Kavli Institute for Nanoscience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, Oxford, OX1 3QU, UK.

Publikováno v: Angewandte Chemie (International ed. in English) [Angew Chem Int Ed Engl] 2023 Sep 04; Vol. 62 (36), pp. e202305694. Date of Electronic Publication: 2023 Jul 25.

DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.

Autor: Kalmankar NV; National Centre for Biological Sciences, Tata Institute of Fundamental Research (TIFR), GKVK Campus, Bellary Road, Bengaluru, Karnataka 560065, India.; The University of Trans-Disciplinary Health Sciences and Technology (TDU), #74/2, Jarakabande Kaval, Post Attur, Via Yelahanka, Bengaluru, Karnataka 560064, India., Pavalam M; National Centre for Biological Sciences, Tata Institute of Fundamental Research (TIFR), GKVK Campus, Bellary Road, Bengaluru, Karnataka 560065, India., Indrakumar S; Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, Karnataka 560012, India., Srinivasan N; Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, Karnataka 560012, India., Sowdhamini R; National Centre for Biological Sciences, Tata Institute of Fundamental Research (TIFR), GKVK Campus, Bellary Road, Bengaluru, Karnataka 560065, India.; Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, Karnataka 560012, India.; Institute of Bioinformatics and Applied Biotechnology, Biotech Park, GN Ramachandran Road, Electronics City Phase 1, Bengaluru, Karnataka 560100, India.

Publikováno v: Database : the journal of biological databases and curation [Database (Oxford)] 2022 Mar 01; Vol. 2022.

Disulfide-Rich Cyclic Peptides from Clitoria ternatea Protect against β-Amyloid Toxicity and Oxidative Stress in Transgenic Caenorhabditis elegans .

Autor: Kalmankar NV; National Centre for Biological Sciences (TIFR), GKVK Campus, Bellary Road, Bangalore, Karnataka 560065, India.; The University of Trans-Disciplinary Health Sciences and Technology (TDU), #74/2, Jarakabande Kaval, Post Attur, via Yelahanka, Bangalore, Karnataka 560064, India., Hari H; National Centre for Biological Sciences (TIFR), GKVK Campus, Bellary Road, Bangalore, Karnataka 560065, India., Sowdhamini R; National Centre for Biological Sciences (TIFR), GKVK Campus, Bellary Road, Bangalore, Karnataka 560065, India., Venkatesan R; National Centre for Biological Sciences (TIFR), GKVK Campus, Bellary Road, Bangalore, Karnataka 560065, India.; Department of Biological Sciences, Indian Institute of Science Education and Research, Mohanpur, West Bengal 741246, India.

Publikováno v: Journal of medicinal chemistry [J Med Chem] 2021 Jun 10; Vol. 64 (11), pp. 7422-7433. Date of Electronic Publication: 2021 May 28.

Sparsely populated residue conformations in protein structures: revisiting "experimental" Ramachandran maps.

Autor: Kalmankar NV; Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, 560065, India., Ramakrishnan C, Balaram P

Publikováno v: Proteins [Proteins] 2014 Jul; Vol. 82 (7), pp. 1101-12. Date of Electronic Publication: 2013 Dec 18.