Zobrazeno 1 - 10
of 54
pro vyhledávání: '"KEVIN D. MURRAY"'
Autor:
Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown
Publikováno v:
F1000Research, Vol 4 (2015)
The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, D
Externí odkaz:
https://doaj.org/article/dc774924b98d40d0bd7efc6c2c5b346c
Publikováno v:
PLoS Computational Biology, Vol 13, Iss 9, p e1005727 (2017)
Modern genomics techniques generate overwhelming quantities of data. Extracting population genetic variation demands computationally efficient methods to determine genetic relatedness between individuals (or "samples") in an unbiased manner, preferab
Externí odkaz:
https://doaj.org/article/e3a9b3f8722c4fb0b1d292bf45c4d525
Autor:
J. Grey Monroe, Kevin D. Murray, Wenfei Xian, Pablo Carbonell-Bejerano, Charles B. Fenster, Detlef Weigel
SUMMARYIt has recently been proposed that the uneven distribution of epigenomic features might facilitate reduced mutation rate in constrained regions of the Arabidopsis thaliana genome, even though previous work had shown that it would be difficult
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0c82c637012e53146a1a572f38a90fd1
https://doi.org/10.1101/2022.08.21.504682
https://doi.org/10.1101/2022.08.21.504682
Autor:
John W Whale, Rebecca Jordan, Margaret Byrne, Peter A. Harrison, Tara Hopley, Helen M. Bothwell, Jason G. Bragg, Paul D. Rymer, Rose L. Andrew, Dorothy A Steane, Collin W. Ahrens, Kevin D Murray
Publikováno v:
Molecular Ecology Resources. 21:1460-1474
Genotype-environment association (GEA) methods have become part of the standard landscape genomics toolkit, yet, we know little about how to best filter genotype-by-sequencing data to provide robust inferences for environmental adaptation. In many ca
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb29672f5c3acb4ab90ae3fe4e82a7ba
https://doi.org/10.1111/1755-0998.13351
https://doi.org/10.1111/1755-0998.13351
Autor:
Margaret Byrne, Kevin D Murray, Ashley Jones, Paul D. Rymer, Justin O. Borevitz, David T. Tissue, Scott Ferguson, Jason G. Bragg, Collin W. Ahrens, Richard A Mazanec
Global shifts in climate and precipitation patterns are altering the diversity and structure of forests. The ability for species to adapt is especially difficult for long lived foundation species with unknown genetic and trait diversity. We harnessed
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d8e29412fa0a0f604effa84641d2d635
https://doi.org/10.1101/2021.08.07.455511
https://doi.org/10.1101/2021.08.07.455511
Autor:
Jasmine K. Janes, Helen M. Bothwell, Ashley Jones, Justin O. Borevitz, Rose L. Andrew, Kevin D Murray
Publikováno v:
Molecular Ecology
This article was originally published as: Murray, K.D., Janes, J.K., Jones, A., Bothwell, H.M., Andrew, R.L., & Borevitz, J.O. (2019). Landscape drivers of genomic diversity and divergence in woodland Eucalyptus. Molecular Ecology, 28(24), 5232-5247.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::711642d33f5f6dc5b6d40ba0797d1699
https://doi.org/10.1111/mec.15287
https://doi.org/10.1111/mec.15287
Autor:
Helen M. Bothwell, Jason G. Bragg, Margaret Byrne, Dorothy A Steane, Rebecca Jordan, John W Whale, Collin W. Ahrens, Rose L. Andrew, Peter A. Harrison, Tara Hopley, Kevin D Murray, Paul D. Rymer
Genotype-environment association (GEA) methods have become part of the standard landscape genomics toolkit, yet, we know little about how to filter genotype-by-sequencing data to provide robust inferences for environmental adaptation. In many cases,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dab6d861c03f507e7ec7a25a32eadadc
https://doi.org/10.1101/2020.09.08.288308
https://doi.org/10.1101/2020.09.08.288308
Autor:
Kurt A. Spokas, Accession Contributors, Steve R Eichten, John P. Vogel, Norman Warthmann, Kevin D Murray, Sean P. Gordon, Justin O. Borevitz, Pip B Wilson, Nicola C Aitken, Riyan Cheng, Jared Streich
Publikováno v:
Genetics
The development of model systems requires a detailed assessment of standing genetic variation across natural populations. The Brachypodium species complex has been promoted as a plant model for grass genomics with translation to small grain and bioma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e7b5863891addf224161f4458f10c8de
https://doi.org/10.1534/genetics.118.301589
https://doi.org/10.1534/genetics.118.301589
Autor:
Diep Ganguly, Barry J. Pogson, Aaron B Smith, Steven R. Eichten, Peter A. Crisp, Kevin D Murray, Anthony A. Millar
Publikováno v:
Plant Physiology. 178:1614-1630
In plants, the molecular function(s) of the nucleus-localized 5'-3' EXORIBONUCLEASES (XRNs) are unclear; however, their activity is reported to have a significant effect on gene expression and SAL1-mediated retrograde signaling. Using parallel analys
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::912fc90bfd62b2ba5b5dab9157d6d063
https://doi.org/10.1104/pp.18.00758
https://doi.org/10.1104/pp.18.00758
Autor:
Aaron B Smith, Iain R. Searle, Kevin D Murray, Steven R. Eichten, Diep Ganguly, Barry J. Pogson, Justin O. Borevitz, Peter A. Crisp, Ryan Lister, Gonzalo M. Estavillo, Ethan Ford, Ozren Bogdanovic
Publikováno v:
The Plant Cell. 29:1836-1863
Stress recovery may prove to be a promising approach to increase plant performance and, theoretically, mRNA instability may facilitate faster recovery. Transcriptome (RNA-seq, qPCR, sRNA-seq, and PARE) and methylome profiling during repeated excess-l
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e71f8f6fe30eff96a796543ea1f807b7
https://doi.org/10.1105/tpc.16.00828
https://doi.org/10.1105/tpc.16.00828