Zobrazeno 1 - 10
of 1 779
pro vyhledávání: '"K-mer"'
A tip of the iceberg: genome survey indicated a complex evolutionary history of Garuga Roxb. species
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-13 (2024)
Abstract Background Garuga Roxb. is a genus endemic to southwest China and other tropical regions in Southeast Asia facing risk of extinction due to the loss of tropical forests and changes in land use. Conducting a genome survey of G. forrestii cont
Externí odkaz:
https://doaj.org/article/dc4a04b42b8a479696749bfdee76a650
Autor:
Ioannis Mouratidis, Fotis A. Baltoumas, Nikol Chantzi, Michail Patsakis, Candace S.Y. Chan, Austin Montgomery, Maxwell A. Konnaris, Eleni Aplakidou, George C. Georgakopoulos, Anshuman Das, Dionysios V. Chartoumpekis, Jasna Kovac, Georgios A. Pavlopoulos, Ilias Georgakopoulos-Soares
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 23, Iss , Pp 1919-1928 (2024)
The decrease in sequencing expenses has facilitated the creation of reference genomes and proteomes for an expanding array of organisms. Nevertheless, no established repository that details organism-specific genomic and proteomic sequences of specifi
Externí odkaz:
https://doaj.org/article/b205166809fc422ea5069ccb0553ef5a
Publikováno v:
BMC Bioinformatics, Vol 25, Iss 1, Pp 1-17 (2024)
Abstract Background Using next-generation sequencing technologies, scientists can sequence complex microbial communities directly from the environment. Significant insights into the structure, diversity, and ecology of microbial communities have resu
Externí odkaz:
https://doaj.org/article/22e595699a344db7b21d8d61388277c5
Publikováno v:
Frontiers in Bioinformatics, Vol 4 (2024)
The application of quantum principles in computing has garnered interest since the 1980s. Today, this concept is not only theoretical, but we have the means to design and execute techniques that leverage the quantum principles to perform calculations
Externí odkaz:
https://doaj.org/article/b7b265e25bb74ecbabfa3a21d51d50f3
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
IntroductionIn the realm of next-generation sequencing datasets, various characteristics can be extracted through k-mer based analysis. Among these characteristics, genome size (GS) is one that can be estimated with relative ease, yet achieving satis
Externí odkaz:
https://doaj.org/article/393389426bf3479586b1407f7b7d7f19
Autor:
Batuhan Eralp, Emre Sefer
Publikováno v:
BMC Cancer, Vol 24, Iss 1, Pp 1-22 (2024)
Abstract Background Cancerous cells’ identity is determined via a mixture of multiple factors such as genomic variations, epigenetics, and the regulatory variations that are involved in transcription. The differences in transcriptome expression as
Externí odkaz:
https://doaj.org/article/3d3b6b00596b4f058c07ea1e71d4b8ef
Autor:
Rubyeat Islam, Atif Rahman
Publikováno v:
Heliyon, Vol 10, Iss 11, Pp e32227- (2024)
Phylogenetic tree estimation using conventional approaches usually requires pairwise or multiple sequence alignment. However, sequence alignment has difficulties related to scalability and accuracy in case of long sequences such as whole genomes, low
Externí odkaz:
https://doaj.org/article/1831135ed1c34161b41617600a599eb1
Autor:
Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Koşaloğlu-Yalçın, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-14 (2023)
Abstract Background Numerous tools exist for biological sequence comparisons and search. One case of particular interest for immunologists is finding matches for linear peptide T cell epitopes, typically between 8 and 15 residues in length, in a larg
Externí odkaz:
https://doaj.org/article/1b54dfc343104abe9241d35bfc25c6f1
Publikováno v:
Microbiology Spectrum, Vol 12, Iss 2 (2024)
ABSTRACTMicrosporidia are obligate intracellular eukaryotic parasites with an extremely broad host range. They have both economic and public health importance. Ploidy in microsporidia is variable, with a few species formally identified as diploid and
Externí odkaz:
https://doaj.org/article/2c13c6ae39a54d83bd64983007bce650
Publikováno v:
Microbiology Spectrum, Vol 12, Iss 4 (2024)
ABSTRACTSmall sample sizes and loss of sequencing reads during the microbiome data preprocessing can limit the statistical power of differentiating fresh produce phenotypes and prevent the detection of important bacterial species associated with prod
Externí odkaz:
https://doaj.org/article/7468dd3b69cc4dfcbec3418b9acfeece