Two antagonistic response regulators control Pseudomonas aeruginosa polarization during mechanotaxis.

Autor: Kühn MJ; Institute of Bioengineering and Global Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Macmillan H; Department of Medicine, University of California, San Francisco, CA, USA., Talà L; Institute of Bioengineering and Global Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Inclan Y; Department of Medicine, University of California, San Francisco, CA, USA., Patino R; Department of Medicine, University of California, San Francisco, CA, USA., Pierrat X; Institute of Bioengineering and Global Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Al-Mayyah Z; Institute of Bioengineering and Global Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Engel JN; Department of Medicine, University of California, San Francisco, CA, USA.; Department of Microbiology and Immunology, University of California, San Francisco, CA, USA., Persat A; Institute of Bioengineering and Global Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

Publikováno v: The EMBO journal [EMBO J] 2023 Apr 03; Vol. 42 (7), pp. e112165. Date of Electronic Publication: 2023 Feb 16.

Wrapped Up: The Motility of Polarly Flagellated Bacteria.

Autor: Thormann KM; Institute of Microbiology and Molecular Biology, Justus Liebig University Gießen, Gießen, Germany; email: kai.thormann@mikro.bio.uni-giessen.de., Beta C; Institute of Physics and Astronomy, University of Potsdam, Potsdam, Germany; email: beta@uni-potsdam.de., Kühn MJ; Institute of Bioengineering and Global Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland; email: marco.kuhn@epfl.ch.

Publikováno v: Annual review of microbiology [Annu Rev Microbiol] 2022 Sep 08; Vol. 76, pp. 349-367. Date of Electronic Publication: 2022 Jun 01.

Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant.

Autor: Koslow W; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Kühn MJ; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany.; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany., Binder S; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany., Klitz M; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Abele D; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Basermann A; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Meyer-Hermann M; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2022 May 16; Vol. 18 (5), pp. e1010054. Date of Electronic Publication: 2022 May 16 (Print Publication: 2022).

Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution.

Autor: Kühn MJ; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany. Electronic address: Martin.Kuehn@DLR.de., Abele D; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Mitra T; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany., Koslow W; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Abedi M; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany., Rack K; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Siggel M; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Khailaie S; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany., Klitz M; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Binder S; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany., Spataro L; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Gilg J; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Kleinert J; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Häberle M; Earth Observation Center, Department EO Data Science, German Aerospace Center, Weßling, Germany., Plötzke L; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany., Spinner CD; Technical University of Munich, School of Medicine, University Hospital rechts der Isar, Department of Internal Medicine II, Munich, Germany., Stecher M; University Hospital of Cologne, Department I for Internal Medicine, University of Cologne; German Center for Infection Research (DZIF), Cologne, Germany., Zhu XX; Earth Observation Center, Department EO Data Science, German Aerospace Center, Weßling, Germany., Basermann A; Institute for Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany. Electronic address: Achim.Basermann@DLR.de., Meyer-Hermann M; Department of Systems Immunology and Braunschweig Integrated Centre of Systems Biology (BRICS), Helmholtz Centre for Infection Research, Braunschweig, Germany. Electronic address: MMH@Theoretical-Biology.de.

Publikováno v: Mathematical biosciences [Math Biosci] 2021 Sep; Vol. 339, pp. 108648. Date of Electronic Publication: 2021 Jun 30.

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation.

Autor: Wong GCL; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., Antani JD; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States of America., Lele PP; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, United States of America., Chen J; Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA24061, United States of America., Nan B; Department of Biology, Texas A&M University, College Station, Texas, TX 77845, United States of America., Kühn MJ; Institute of Bioengineering and Global Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Persat A; Institute of Bioengineering and Global Health Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Bru JL; Department of Molecular Biology & Biochemistry, University of California-Irvine, California, CA 92697, United States of America., Høyland-Kroghsbo NM; Department of Plant and Environmental Sciences, University of Copenhagen, DK-1871 Frederiksberg, Denmark., Siryaporn A; Department of Molecular Biology & Biochemistry, University of California-Irvine, California, CA 92697, United States of America.; Department of Physics & Astronomy, University of California-Irvine, California, CA 92697, United States of America., Conrad JC; William A Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas, TX 77204, United States of America., Carrara F; Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093 Zurich, Switzerland., Yawata Y; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.; Microbiology Research Center for Sustainability, University of Tsukuba, 305-8572 Tsukuba, Japan., Stocker R; Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093 Zurich, Switzerland., V Brun Y; University of Montreal, Faculty of Medicine, Montreal, Quebec, H3C 3J7, Canada., Whitfield GB; University of Montreal, Faculty of Medicine, Montreal, Quebec, H3C 3J7, Canada., Lee CK; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., de Anda J; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., Schmidt WC; Department of Bioengineering, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America.; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, California, CA 90095, United States of America., Golestanian R; Max Planck Institute for Dynamics and Self-Organization (MPIDS), D-37077 Göttingen, Germany.; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom., O'Toole GA; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, United States of America., Floyd KA; Department of Microbiology and Environmental Toxicology, University of California-Santa Cruz, Santa Cruz, California, CA 95060, United States of America., Yildiz FH; Department of Microbiology and Environmental Toxicology, University of California-Santa Cruz, Santa Cruz, California, CA 95060, United States of America., Yang S; CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China., Jin F; CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China., Toyofuku M; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.; Microbiology Research Center for Sustainability, University of Tsukuba, 305-8572 Tsukuba, Japan., Eberl L; Department of Plant and Microbial Biology, University of Zürich, 8008 Zürich, Switzerland., Nomura N; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.; Microbiology Research Center for Sustainability, University of Tsukuba, 305-8572 Tsukuba, Japan., Zacharoff LA; Department of Physics and Astronomy, University of Southern California, Los Angeles, California, CA 90089, United States of America.; Department of Chemistry, University of Southern California, Los Angeles, California, CA 90089, United States of America., El-Naggar MY; Department of Physics and Astronomy, University of Southern California, Los Angeles, California, CA 90089, United States of America.; Department of Chemistry, University of Southern California, Los Angeles, California, CA 90089, United States of America.; Department of Biological Sciences, University of Southern California, Los Angeles, California, CA 90089, United States of America., Yalcin SE; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, CT 06516, United States of America.; Microbial Sciences Institute, Yale University, New Haven, Connecticut, CT 06516, United States of America., Malvankar NS; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, CT 06516, United States of America.; Microbial Sciences Institute, Yale University, New Haven, Connecticut, CT 06516, United States of America., Rojas-Andrade MD; Department of Materials Science and Engineering, University of California-Irvine, Irvine, California CA 92697, United States of America., Hochbaum AI; Department of Molecular Biology & Biochemistry, University of California-Irvine, California, CA 92697, United States of America.; Department of Materials Science and Engineering, University of California-Irvine, Irvine, California CA 92697, United States of America.; Department of Chemistry, University of California-Irvine, Irvine, California, CA 92697, United States of America.; Department of Chemical and Biomolecular Engineering, University of California-Irvine, Irvine, California, CA 92697, United States of America., Yan J; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, CT 06511, United States of America., Stone HA; Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, New Jersey, NJ 08544, United States of America., Wingreen NS; Department of Molecular Biology, Princeton University, Princeton, New Jersey, NJ 08544, United States of America.; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, NJ 08544, United States of America., Bassler BL; Department of Molecular Biology, Princeton University, Princeton, New Jersey, NJ 08544, United States of America.; The Howard Hughes Medical Institute, Chevy Chase, Maryland MD 20815, United States of America., Wu Y; Department of Physics and Shenzhen Research Institute, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China., Xu H; Department of Physics and Shenzhen Research Institute, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China., Drescher K; Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany.; Department of Physics, Philipps-Universität Marburg, 35043 Marburg, Germany., Dunkel J; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts, MA 02139-4307, United States of America.

Publikováno v: Physical biology [Phys Biol] 2021 Jun 23; Vol. 18 (5). Date of Electronic Publication: 2021 Jun 23.