Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Justin Payne"'
Autor:
Jayanthi Gangiredla, Hugh Rand, Daniel Benisatto, Justin Payne, Charles Strittmatter, Jimmy Sanders, William J. Wolfgang, Kevin Libuit, James B. Herrick, Melanie Prarat, Magaly Toro, Thomas Farrell, Errol Strain
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-11 (2021)
Abstract Background Processing and analyzing whole genome sequencing (WGS) is computationally intense: a single Illumina MiSeq WGS run produces ~ 1 million 250-base-pair reads for each of 24 samples. This poses significant obstacles for smaller labor
Externí odkaz:
https://doaj.org/article/3918a4b98355463fad4187448142fe12
Autor:
Steve Davis, James B. Pettengill, Yan Luo, Justin Payne, Al Shpuntoff, Hugh Rand, Errol Strain
Publikováno v:
PeerJ Computer Science, Vol 1, p e20 (2015)
The analysis of next-generation sequence (NGS) data is often a fragmented step-wise process. For example, multiple pieces of software are typically needed to map NGS reads, extract variant sites, and construct a DNA sequence matrix containing only si
Externí odkaz:
https://doaj.org/article/5aefdd67fe624e51ba3f55fbd96c181e
Autor:
Cary Pirone-Davies, Maria Hoffmann, Richard J Roberts, Tim Muruvanda, Ruth E Timme, Errol Strain, Yan Luo, Justin Payne, Khai Luong, Yi Song, Yu-Chih Tsai, Matthew Boitano, Tyson A Clark, Jonas Korlach, Peter S Evans, Marc W Allard
Publikováno v:
PLoS ONE, Vol 10, Iss 4, p e0123639 (2015)
The methylation of DNA bases plays an important role in numerous biological processes including development, gene expression, and DNA replication. Salmonella is an important foodborne pathogen, and methylation in Salmonella is implicated in virulence
Externí odkaz:
https://doaj.org/article/04dca1afa2eb4085b825d589e0a3e1f3
Autor:
Hugh Rand, Jayanthi Gangiredla, Jimmy Sanders, Thomas Farrell, Errol Strain, Justin Payne, Melanie Prarat, Magaly Toro, Daniel Benisatto, Charles Strittmatter, James Bruce Herrick, William J. Wolfgang, Kevin Libuit
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-11 (2021)
BMC Genomics
BMC Genomics
Background Processing and analyzing whole genome sequencing (WGS) is computationally intense: a single Illumina MiSeq WGS run produces ~ 1 million 250-base-pair reads for each of 24 samples. This poses significant obstacles for smaller laboratories,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a6a0f71e27452b89029dbd82b053973
https://doaj.org/article/3918a4b98355463fad4187448142fe12
https://doaj.org/article/3918a4b98355463fad4187448142fe12
Autor:
Bart C. Weimer, DJ Darwin R. Bandoy, John J. Miller, Allison M. Weis, James B. Pettengill, B. Carol Huang, James H. Kaufman, Justin Payne, Jessica L. Jones, Catharina H. M. Lüdeke, Ruth Timme, Errol Strain
Publikováno v:
Appl Environ Microbiol
Vibrio parahaemolyticus is the most common cause of seafood-borne illness reported in the United States. The draft genomes of 132 North American clinical and oyster V. parahaemolyticus isolates were sequenced to investigate their phylogenetic and bio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a1a68913cb0d0164f4a74ae114eadf6a
https://pubmed.ncbi.nlm.nih.gov/33187991
https://pubmed.ncbi.nlm.nih.gov/33187991
Autor:
DJ Darwin R. Bandoy, James B. Pettengill, Errol Strain, Allison M. Weis, Justin Payne, Ruth Timme, Bart C. Weimer, John J. Miller, James H. Kaufman, Catharina H. M. Lüdeke, B. Carol Huang, Jessica L. Jones
Publikováno v:
Appl Environ Microbiol
Applied and environmental microbiology, vol 87, iss 3
Applied and environmental microbiology, vol 87, iss 3
Vibrio parahaemolyticus is the most common cause of seafood-borne illness reported in the United States. The draft genomes of 132 North American clinical and oyster V. parahaemolyticus isolates were sequenced to investigate their phylogenetic and bio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::80becda443500b5cb8ccb92ec5d31c87
https://pubmed.ncbi.nlm.nih.gov/34037462
https://pubmed.ncbi.nlm.nih.gov/34037462
Publikováno v:
Goldschmidt Abstracts.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e51b0bbbfb3c28497be95d4ef5f56f5f
https://doi.org/10.46427/gold2020.1759
https://doi.org/10.46427/gold2020.1759
Publikováno v:
Goldschmidt Abstracts.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5f0f4272eadab5498538186e9e6d3b2e
https://doi.org/10.46427/gold2020.2700
https://doi.org/10.46427/gold2020.2700
Publikováno v:
Applied and Environmental Microbiology. 85
Bacteria of the genus Shigella, consisting of 4 species and >50 serotypes, cause shigellosis, a foodborne disease of significant morbidity, mortality, and economic loss worldwide. Classical Shigella identification based on selective media and serolog
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a9f2a0bd3eab706c749ef15a1db2399
https://doi.org/10.1128/aem.00165-19
https://doi.org/10.1128/aem.00165-19
Autor:
Yan Luo, Peter Evans, Thomas S. Hammack, Robert Stones, Phillip Curry, Justin Payne, Tim Muruvanda, Errol Strain, David Melka, Mickey E. Parish, Monique Salter, Eric W. Brown, George Kastanis, Charles Wang, Eileen Liu, Okumu K'Aluoch, Atin R. Datta, Ruth Timme, Marc W. Allard, Laurel S. Burall, Anna Maounounen-Laasri, Yi Chen, Antonio J. De Jesus
Publikováno v:
Applied and Environmental Microbiology
In 2014, the identification of stone fruits contaminated with Listeria monocytogenes led to the subsequent identification of a multistate outbreak. Simultaneous detection and enumeration of L. monocytogenes were performed on 105 fruits, each weighing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cdd4e875cf6a8acb4149cb08850aa2e2
http://europepmc.org/articles/PMC5118914
http://europepmc.org/articles/PMC5118914