Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Justin M. Burgener"'
Autor:
Samantha L. Wilson, Shu Yi Shen, Lauren Harmon, Justin M. Burgener, Tim Triche, Jr., Scott V. Bratman, Daniel D. De Carvalho, Michael M. Hoffman
Publikováno v:
Cell Reports: Methods, Vol 2, Iss 9, Pp 100294- (2022)
Summary: Cell-free methylated DNA immunoprecipitation sequencing (cfMeDIP-seq) identifies genomic regions with DNA methylation, using a protocol adapted to work with low-input DNA samples and with cell-free DNA (cfDNA). We developed a set of syntheti
Externí odkaz:
https://doaj.org/article/8df9a2a8c6e84980b59dbd24e459a70f
Autor:
Scott V. Bratman, Daniel D. De Carvalho, Michael M. Hoffman, David P. Goldstein, John R. de Almeida, Lillian L. Siu, Anna Spreafico, Ilan Weinreb, John N. Waldron, Geoffrey Liu, Fei-Fei Liu, Wei Xu, Sareh Keshavarzi, Shao Hui Huang, Shu Yi Shen, Yangqiao Zheng, Zhen Zhao, Jinfeng Zou, Justin M. Burgener
Supplementary Figure from Tumor-Naïve Multimodal Profiling of Circulating Tumor DNA in Head and Neck Squamous Cell Carcinoma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3be589960f78c35756066c85a009e20f
https://doi.org/10.1158/1078-0432.22480124.v1
https://doi.org/10.1158/1078-0432.22480124.v1
Autor:
Scott V. Bratman, Daniel D. De Carvalho, Michael M. Hoffman, David P. Goldstein, John R. de Almeida, Lillian L. Siu, Anna Spreafico, Ilan Weinreb, John N. Waldron, Geoffrey Liu, Fei-Fei Liu, Wei Xu, Sareh Keshavarzi, Shao Hui Huang, Shu Yi Shen, Yangqiao Zheng, Zhen Zhao, Jinfeng Zou, Justin M. Burgener
Supplementary Data from Tumor-Naïve Multimodal Profiling of Circulating Tumor DNA in Head and Neck Squamous Cell Carcinoma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d7508bd3cc2b0feb60d874081b02721
https://doi.org/10.1158/1078-0432.22480130.v1
https://doi.org/10.1158/1078-0432.22480130.v1
Autor:
Scott V. Bratman, Daniel D. De Carvalho, Michael M. Hoffman, David P. Goldstein, John R. de Almeida, Lillian L. Siu, Anna Spreafico, Ilan Weinreb, John N. Waldron, Geoffrey Liu, Fei-Fei Liu, Wei Xu, Sareh Keshavarzi, Shao Hui Huang, Shu Yi Shen, Yangqiao Zheng, Zhen Zhao, Jinfeng Zou, Justin M. Burgener
Purpose:Circulating tumor DNA (ctDNA) enables personalized treatment strategies in oncology by providing a noninvasive source of clinical biomarkers. In patients with low ctDNA abundance, tumor-naïve methods are needed to facilitate clinical impleme
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c14d85cddf11a2530f5255e99a55683d
https://doi.org/10.1158/1078-0432.c.6530369.v1
https://doi.org/10.1158/1078-0432.c.6530369.v1
Publikováno v:
Nature Protocols. 14:2749-2780
Circulating cell-free DNA (cfDNA) comprises small DNA fragments derived from normal and tumor tissue that are released into the bloodstream. Recently, methylation profiling of cfDNA as a liquid biopsy tool has been gaining prominence due to the prese
Autor:
Shu Yi Shen, Michael M. Hoffman, De Carvalho Dd, Harmon Lm, Timothy J. Triche, Justin M. Burgener, Samantha L. Wilson, Scott V. Bratman
BackgroundCell-free methylated DNA immunoprecipitation-sequencing (cfMeDIP-seq) identifies genomic regions with DNA methylation, using a protocol adapted to work with low-input DNA samples and with cell-free DNA (cfDNA). This method allows for DNA me
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ac71da854a9143542b1ff8f94ade30fc
https://doi.org/10.1101/2021.02.12.430289
https://doi.org/10.1101/2021.02.12.430289
Autor:
Elena Elimova, Mark Lawler, Simon S. McDade, Justin M. Burgener, E. Zhao, Aaron R. Hansen, Marc Oliva, Raymond Woo-Jun Jang, L.L. Siu, Kirsty Taylor, Jinfeng Zou, Scott V. Bratman, Dax Torti, Victoria Coyle, Anna Spreafico
Publikováno v:
Annals of Oncology. 32:S796-S797
Autor:
James B. McNeil, Russell Bahar, Veroni S. Sri Theivakadadcham, Damien D’Amours, Emanuel Rosonina, Marjan Moallem, Giovanni L. Burke, Patricia Richard, Akhi Akhter, Mohammad S. Baig, Yimo Dou, Justin M. Burgener, Benjamin G. Bergey
Publikováno v:
PLoS Genetics, Vol 17, Iss 9, p e1009828 (2021)
PLoS Genetics
PLoS Genetics
Transcription-related proteins are frequently identified as targets of sumoylation, including multiple subunits of the RNA polymerase II (RNAPII) general transcription factors (GTFs). However, it is not known how sumoylation affects GTFs or whether t
Autor:
Shelley Kuang, Malcolm Ryan, Jinfeng Zou, Justin M. Burgener, Natasha B. Leighl, Pamela S. Ohashi, S. Lau, Frances A. Shepherd, Stephanie Wy Wong, Scott V. Bratman, Shirin Soleimani, Devalben Patel, Geoffrey Liu, Ben X. Wang, Ming-Sound Tsao, Penelope A. Bradbury, Stephanie Pedersen, Adrian G. Sacher, Trevor J. Pugh
Publikováno v:
Cancer Research. 81:563-563
Introduction: Durvalumab immunotherapy has rapidly emerged as standard treatment for stage 3 NSCLC patients following definitive chemoradiotherapy (CRT). Multiple novel immunotherapeutic strategies are in development to enhance the chance of cure in
Publikováno v:
Nature protocols. 14(10)
Circulating cell-free DNA (cfDNA) comprises small DNA fragments derived from normal and tumor tissue that are released into the bloodstream. Recently, methylation profiling of cfDNA as a liquid biopsy tool has been gaining prominence due to the prese