Zobrazeno 1 - 10
of 55
pro vyhledávání: '"Justen Andrews"'
Autor:
Hangnoh Lee, C. Joel McManus, Dong-Yeon Cho, Matthew Eaton, Fioranna Renda, Maria Patrizia Somma, Lucy Cherbas, Gemma May, Sara Powell, Dayu Zhang, Lijun Zhan, Alissa Resch, Justen Andrews, Susan E. Celniker, Peter Cherbas, Teresa M. Przytycka, Maurizio Gatti, Brian Oliver, Brenton Graveley, David MacAlpine
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-3 (2019)
Following publication of the original article [1], the authors reported the following errors.
Externí odkaz:
https://doaj.org/article/91aca706efa347ef80b97b20190ad977
Autor:
Peter Smibert, Pedro Miura, Jakub O. Westholm, Sol Shenker, Gemma May, Michael O. Duff, Dayu Zhang, Brian D. Eads, Joe Carlson, James B. Brown, Robert C. Eisman, Justen Andrews, Thomas Kaufman, Peter Cherbas, Susan E. Celniker, Brenton R. Graveley, Eric C. Lai
Publikováno v:
Cell Reports, Vol 1, Iss 3, Pp 277-289 (2012)
We analyzed the usage and consequences of alternative cleavage and polyadenylation (APA) in Drosophila melanogaster by using >1 billion reads of stranded mRNA-seq across a variety of dissected tissues. Beyond demonstrating that a majority of fly tran
Externí odkaz:
https://doaj.org/article/284d5c71c22741fdbc558274abeb334a
Autor:
Peter Smibert, Pedro Miura, Jakub O. Westholm, Sol Shenker, Gemma May, Michael O. Duff, Dayu Zhang, Brian D. Eads, Joe Carlson, James B. Brown, Robert C. Eisman, Justen Andrews, Thomas Kaufman, Peter Cherbas, Susan E. Celniker, Brenton R. Graveley, Eric C. Lai
Publikováno v:
Cell Reports, Vol 3, Iss 3, p 969 (2013)
Externí odkaz:
https://doaj.org/article/c9c98bce815640bd830f0e5ca4bd156d
Autor:
Teresa M. Przytycka, Maria Patrizia Somma, Maurizio Gatti, Brenton R. Graveley, Justen Andrews, Dayu Zhang, Lucy Cherbas, Sara K. Powell, Matthew L. Eaton, Brian Oliver, Gemma E. May, David M. MacAlpine, Susan E. Celniker, Fioranna Renda, C. Joel McManus, Alissa M. Resch, Dong-Yeon Cho, Peter Cherbas, Lijun Zhan, Hangnoh Lee
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-3 (2019)
Following publication of the original article [1], the authors reported the following errors.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::943854332599954b4d7194acf79e621d
https://doi.org/10.1186/s13059-019-1668-5
https://doi.org/10.1186/s13059-019-1668-5
Autor:
Jaaved Mohammed, Lucy Cherbas, Jakub Orzechowski Westholm, Peter Cherbas, Harrison Tsai, Thomas C. Kaufman, Jiayu Wen, Qi Dai, Diane Bortolamiol-Becet, Dayu Zhang, Katsutomo Okamura, Nicolas Robine, Erik Ladewig, Justen Andrews, Alex S. Flynt, Eric C. Lai, Adam Siepel
Publikováno v:
Genome Research. 24:1236-1250
We expanded the knowledge base for Drosophila cell line transcriptomes by deeply sequencing their small RNAs. In total, we analyzed more than 1 billion raw reads from 53 libraries across 25 cell lines. We verify reproducibility of biological replicat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4ae322c3b65c32a6a5d49ddae7e5bac
https://doi.org/10.1101/gr.161554.113
https://doi.org/10.1101/gr.161554.113
Publikováno v:
Proceedings of the National Academy of Sciences. 109:20526-20531
Sex-specific trait expression is frequently associated with highly variable, condition-dependent expression within sexes and rapid divergence among closely related species. Horned beetles are an excellent example for studying the molecular basis of t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3d2b9ab90878a3b17573bb931436c90
https://doi.org/10.1073/pnas.1118589109
https://doi.org/10.1073/pnas.1118589109
Publikováno v:
Proceedings of the National Academy of Sciences. 109:858-863
Although transitions from sexual to asexual reproduction are thought to have important evolutionary consequences, little is known about the mechanistic underpinnings of these changes. The cyclical parthenogen Daphnia pulex is a powerful model in whic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d3d69c37c6a41911fb87f0294ee5290
https://doi.org/10.1073/pnas.1119667109
https://doi.org/10.1073/pnas.1119667109
Autor:
Chris Zaleski, Brenton R. Graveley, Wei Lin, Thomas R. Gingeras, Peter Cherbas, Srinka Ghosh, Philipp Kapranov, Alexander Dobin, Joseph W. Carlson, Lucy Cherbas, Li Yang, Carrie A. Davis, Yi Zou, Johnny Roberts, Justen Andrews, Kim Bell, Michael O. Duff, Roger A. Hoskins, Jeong Hyeon Choi, Jane M. Landolin, Laura Langton, Michael R. Brent, Jacqueline Dumais, Dayu Zhang, Anastasia Samsonova, Marijke J. van Baren, Aaron Tenney, Norbert Perrimon, Haixu Tang, Brian D. Eads, Aarron T. Willingham, Thomas C. Kaufman, Susan E. Celniker
Publikováno v:
Genome Research. 21:301-314
Drosophila melanogaster cell lines are important resources for cell biologists. Here, we catalog the expression of exons, genes, and unannotated transcriptional signals for 25 lines. Unannotated transcription is substantial (typically 19% of euchro-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c49dfbe4326ddaaee72701ab861dbd54
https://doi.org/10.1101/gr.112961.110
https://doi.org/10.1101/gr.112961.110
Autor:
Hazuki Takahashi, Timo Lassmann, Jane M. Landolin, Joseph W. Carlson, Kenneth H. Wan, Jeremy E. Sandler, Charles Yu, Justen Andrews, Thomas C. Kaufman, Benjamin W. Booth, Peter J. Bickel, Piero Carninci, Dayu Zhang, Li Yang, James B. Brown, Brenton R. Graveley, Nathan Boley, Roger A. Hoskins, Susan E. Celniker
Publikováno v:
Genome Research. 21:182-192
Core promoters are critical regions for gene regulation in higher eukaryotes. However, the boundaries of promoter regions, the relative rates of initiation at the transcription start sites (TSSs) distributed within them, and the functional significan
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::771515dce6d8553ca11a2099a941f14b
https://doi.org/10.1101/gr.112466.110
https://doi.org/10.1101/gr.112466.110
Autor:
Roger A. Hoskins, Peter Cherbas, Brian B. Tuch, Lucy Cherbas, Michael R. Brent, Wei Lin, Laura Langton, Dayu Zhang, James B. Brown, Thomas R. Gingeras, Aarron T. Willingham, Alexander Dobin, Brenton R. Graveley, Susan E. Celniker, Nathan Boley, Carlo G. Artieri, Steven E. Brenner, Nicolas R. Mattiuzzo, Carrie A. Davis, Marco Blanchette, Jeremy E. Sandler, David Sturgill, Sandrine Dudoit, Brian Oliver, Benjamin W. Booth, Peter J. Bickel, Renhua Li, Yu Zhang, Norbert Perrimon, Phil Kapranov, David Scott Miller, Ann S. Hammonds, Marijke J. van Baren, Yi Zou, Richard E. Green, Joseph W. Carlson, Lichun Jiang, Jane M. Landolin, Chris Zaleski, Li Yang, Kenneth H. Wan, Thomas C. Kaufman, Brian D. Eads, John H. Malone, Angela N. Brooks, Michael O. Duff, Justen Andrews
Publikováno v:
Nature
Drosophila melanogaster is one of the most well studied genetic model organisms, nonetheless its genome still contains unannotated coding and non-coding genes, transcripts, exons, and RNA editing sites. Full discovery and annotation are prerequisites
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e3a64b8782a3415cabf3d9ff9b68cd7
https://doi.org/10.1038/nature09715
https://doi.org/10.1038/nature09715