Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Jurgen F. Nijkamp"'
Autor:
Marijke A. H. Luttik, Jack T. Pronk, Frank Koopman, M. van den Broek, Denise T. D. de Ridder, Jurgen F. Nijkamp, E. Ramos, J.M. Daran, Irina Bolat, J. M. Geertman
Publikováno v:
Appl. Environ. Microbiol. September 2015 vol. 81 no. 18 6253-6267
Applied and Environmental Microbiology 81 (2015) 18
Applied and Environmental Microbiology, 81(18), 6253-6267
Applied and Environmental Microbiology
Applied and Environmental Microbiology 81 (2015) 18
Applied and Environmental Microbiology, 81(18), 6253-6267
Applied and Environmental Microbiology
Lager brewing strains of Saccharomyces pastorianus are natural interspecific hybrids originating from the spontaneous hybridization of Saccharomyces cerevisiae and Saccharomyces eubayanus . Over the past 500 years, S. pastorianus has been domesticate
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c6bf300ec1217fc6c8f743f954de004a
https://doi.org/10.1128/aem.01263-15
https://doi.org/10.1128/aem.01263-15
Publikováno v:
Bioinformatics. 29:2826-2834
Motivation: Although many tools are available to study variation and its impact in single genomes, there is a lack of algorithms for finding such variation in metagenomes. This hampers the interpretation of metagenomics sequencing datasets, which are
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a4c811e488696d2618082930c8b62cd1
https://doi.org/10.1093/bioinformatics/btt502
https://doi.org/10.1093/bioinformatics/btt502
Autor:
Marcel J. T. Reinders, Marcel van den Broek, Jean-Marc Daran, Dick de Ridder, Jurgen F. Nijkamp, Jan-Maarten A. Geertman
Publikováno v:
Bioinformatics. 28:3195-3202
Motivation: Comparing genomes of individual organisms using next-generation sequencing data is, until now, mostly performed using a reference genome. This is challenging when the reference is distant and introduces bias towards the exact sequence pre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47e0e8067e9408a3827b83f5d4aeafd8
https://doi.org/10.1093/bioinformatics/bts601
https://doi.org/10.1093/bioinformatics/bts601
Publikováno v:
Bioinformatics, 6 April 2012
Motivation: The increasing availability of second-generation high-throughput sequencing (HTS) technologies has sparked a growing interest in de novo genome sequencing. This in turn has fueled the need for reliable means of obtaining high-quality draf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8b08e2a4e776227c0882d4fc910adfa4
https://pubmed.ncbi.nlm.nih.gov/22492642
https://pubmed.ncbi.nlm.nih.gov/22492642
Autor:
Dick de Ridder, Jean-Marc Daran, Stefan de Kok, Jurgen F. Nijkamp, Jack T. Pronk, Antonius J. A. van Maris, Filipa C. Roque, Bart Oud
Publikováno v:
FEMS yeast research. 12(3)
Laboratory evolution is a powerful approach in applied and fundamental yeast research, but complete elucidation of the molecular basis of evolved phenotypes remains a challenge. In this study, DNA microarray-based transcriptome analysis and whole-gen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::765373642ae91c96b36f7d72ec7f91ec
https://pubmed.ncbi.nlm.nih.gov/22257278
https://pubmed.ncbi.nlm.nih.gov/22257278
Autor:
Marcel J. T. Reinders, Paul Klaassen, Jurgen F. Nijkamp, Stefan de Kok, Marcel van den Broek, Marijke A. H. Luttik, Darren Platt, Wilbert H. M. Heijne, Lizanne Bosman, Chris J. Paddon, Jean-Marc Daran, Roeland C. H. J. van Ham, Peter Kötter, Jack T. Pronk, Jens Nielsen, Dick de Ridder, Pascale Daran-Lapujade, Wanwipa Vongsangnak, Erwin Datema
Publikováno v:
Microbial Cell Factories, Vol 11, Iss 1, p 36 (2012)
Microbial Cell Factories 11 (2012)
Microbial Cell Factories
Microbial Cell Factories, 11, 2012
Microbial Cell Factories, 11
Microbial Cell Factories 11 (2012)
Microbial Cell Factories
Microbial Cell Factories, 11, 2012
Microbial Cell Factories, 11
Saccharomyces cerevisiae CEN.PK 113-7D is widely used for metabolic engineering and systems biology research in industry and academia. We sequenced, assembled, annotated and analyzed its genome. Single-nucleotide variations (SNV), insertions/deletion
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::73f65e9c648b30a3ef60b99425fdc7f7
https://doi.org/10.1186/1475-2859-11-36
https://doi.org/10.1186/1475-2859-11-36
Autor:
Dick de Ridder, Jean-Marc Daran, Wynand Winterbach, Jurgen F. Nijkamp, Marcel J. T. Reinders, Marcel van den Broek
Publikováno v:
Bioinformatics, 26 (18), 2010
Bioinformatics
Bioinformatics
Motivation: De novo assembly of a eukaryotic genome with next-generation sequencing data is still a challenging task. Over the past few years several assemblers have been developed, often suitable for one specific type of sequencing data. The number
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::da6b56be9cdaf6f8b1f7addc62115676
http://resolver.tudelft.nl/uuid:8dab1d11-7a33-464d-b3fd-43f8ece86b6f
http://resolver.tudelft.nl/uuid:8dab1d11-7a33-464d-b3fd-43f8ece86b6f
Autor:
Marcel J. T. Reinders, Herman Jan Pel, Bastiaan A. van den Berg, Dick de Ridder, Jurgen F. Nijkamp, Liang Wu, Johannes Andries Roubos
Publikováno v:
Pattern Recognition in Bioinformatics ISBN: 9783642160004
PRIB
PRIB
The cell-factory A spergillus niger is widely used for industrial enzyme production. To select potential proteins for large-scale production, we developed a sequence-based classifier that predicts if an over-expressed homologous protein will successf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e123ee560f7f2a16ef84ea7d30c5b31b
https://doi.org/10.1007/978-3-642-16001-1_1
https://doi.org/10.1007/978-3-642-16001-1_1