Temporal and spatial changes in the abundance of antibiotic resistance gene markers in a wastewater treatment plant.

Autor: Cailleau G; Laboratory of Microbiology, University of Neuchâtel, Neuchatel, Switzerland., Junier T, Paul C; Laboratory of Microbiology, University of Neuchâtel, Neuchatel, Switzerland., Fatton M; Laboratory of Microbiology, University of Neuchâtel, Neuchatel, Switzerland., Corona-Ramirez A; Laboratory of Microbiology, University of Neuchâtel, Neuchatel, Switzerland., Gning O; Laboratory of Microbiology, University of Neuchâtel, Neuchatel, Switzerland., Beck K; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland., Vidal J; Waste Water Treatment Plant, La Chaux-de-Fonds, Switzerland., Bürgmann H; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland.; Vital-IT group, Swiss Institute of Bioinformatics, Lausanne, Switzerland., Junier P; Laboratory of Microbiology, University of Neuchâtel, Neuchatel, Switzerland.

Publikováno v: Water environment research : a research publication of the Water Environment Federation [Water Environ Res] 2024 Aug; Vol. 96 (8), pp. e11104.

Joint host-pathogen genomic analysis identifies hepatitis B virus mutations associated with human NTCP and HLA class I variation.

Autor: Xu ZM; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Gnouamozi GE; Department of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany., Rüeger S; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Shea PR; Institute for Genomic Medicine, Columbia University, New York, NY, USA., Buti M; Liver Unit, Hospital Universitario Vall d'Hebron and CIBEREHD del Instituto Carlos III, Barcelona, Spain., Chan HL; The Chinese University of Hong Kong, Hong Kong, China., Marcellin P; Service d'Hépatologie, Hôpital Beaujon, Clichy, France., Lawless D; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Naret O; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Zeller M; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Schneuing A; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Scheck A; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Junier T; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Moradpour D; Division of Gastroenterology and Hepatology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland., Podlaha O; Gilead Sciences Inc, Foster City, CA, USA., Suri V; Gilead Sciences Inc, Foster City, CA, USA., Gaggar A; Gilead Sciences Inc, Foster City, CA, USA., Subramanian M; Gilead Sciences Inc, Foster City, CA, USA., Correia B; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Gfeller D; Department of Oncology UNIL-CHUV, Lausanne University Hospital, Ludwig Institute for Cancer Research, University of Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Urban S; Department of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany; German Center for Infection Research (DZIF), Partner Site Heidelberg, Heidelberg, Germany., Fellay J; School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland; Precision Medicine Unit, Biomedical Data Science Center, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland. Electronic address: jacques.fellay@epfl.ch.

Publikováno v: American journal of human genetics [Am J Hum Genet] 2024 Jun 06; Vol. 111 (6), pp. 1018-1034. Date of Electronic Publication: 2024 May 14.

Assessment of fungal spores and spore-like diversity in environmental samples by targeted lysis.

Autor: Corona Ramirez A; Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland., Bregnard D; Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland., Junier T; Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland.; Vital-IT Group, Swiss Institute of Bioinformatics, Lausanne, Switzerland., Cailleau G; Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland., Dorador C; Department of Biotechnology, University of Antofagasta, Antofagasta, Chile., Bindschedler S; Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland., Junier P; Laboratory of Microbiology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland. pilar.junier@unine.ch.

Publikováno v: BMC microbiology [BMC Microbiol] 2023 Mar 14; Vol. 23 (1), pp. 68. Date of Electronic Publication: 2023 Mar 14.

Endospore-forming bacteria as an indicator of pollution in sediments of Lake Geneva

Autor: Bueche M., Sauvain L., Wunderlin T., Junier T., Tercier M., Loizeau J. -L., Masson M., Gascon E., Junier P.

Publikováno v: E3S Web of Conferences, Vol 1, p 33011 (2013)

Treated wastewater and runoff-water is released by the outlet of the sewage treatment plant of Vidy (Lausanne) directly into the Lake of Geneva via a pipe located 300m from the shore. Even if this water is properly treated with modern technologies, w

Externí odkaz: https://doaj.org/article/44ada19831f149ee8852c45ad85000ca

Blood virosphere in febrile Tanzanian children.

Autor: Cordey S; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.; Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva & Faculty of Medicine, University of Geneva, Geneva, Switzerland., Laubscher F; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.; Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva & Faculty of Medicine, University of Geneva, Geneva, Switzerland., Hartley MA; Centre for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland.; Intelligent Global Health, Machine Learning and Optimization Laboratory, EPFL, Lausanne, Switzerland., Junier T; Global Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland., Keitel K; Swiss Tropical and Public Health Institute, University of Basel, Basel, Switzerland.; Department of Paediatric Emergency Medicine, Department of Pediatrics, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland., Docquier M; iGE3 Genomics Platform, University of Geneva, Geneva, Switzerland.; Department of Genetics and Evolution, University of Geneva, Geneva, Switzerland., Guex N; Bioinformatics Competence Center, University of Lausanne and EPFL, Lausanne, Switzerland., Iseli C; Bioinformatics Competence Center, University of Lausanne and EPFL, Lausanne, Switzerland., Vieille G; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.; Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva & Faculty of Medicine, University of Geneva, Geneva, Switzerland., Le Mercier P; SwissProt group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland., Gleizes A; SwissProt group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland., Samaka J; Ifakara Health Institute, Dar es Salaam, Tanzania., Mlaganile T; Ifakara Health Institute, Dar es Salaam, Tanzania., Kagoro F; Ifakara Health Institute, Dar es Salaam, Tanzania., Masimba J; Ifakara Health Institute, Dar es Salaam, Tanzania., Said Z; Ifakara Health Institute, Dar es Salaam, Tanzania., Temba H; Ifakara Health Institute, Dar es Salaam, Tanzania., Elbanna GH; Intelligent Global Health, Machine Learning and Optimization Laboratory, EPFL, Lausanne, Switzerland., Tapparel C; Department of Microbiology and Molecular Medicine, University of Geneva Medical School, Geneva, Switzerland., Zanella MC; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.; Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva & Faculty of Medicine, University of Geneva, Geneva, Switzerland., Xenarios I; Health2030 Genome Center, Geneva, Switzerland.; Agora Center, University of Lausanne, Lausanne, Switzerland., Fellay J; Global Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.; Precision Medicine Unit, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland., D'Acremont V; Centre for Primary Care and Public Health (Unisanté), University of Lausanne, Lausanne, Switzerland.; Swiss Tropical and Public Health Institute, University of Basel, Basel, Switzerland., Kaiser L; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.; Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva & Faculty of Medicine, University of Geneva, Geneva, Switzerland.; Geneva Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland.

Publikováno v: Emerging microbes & infections [Emerg Microbes Infect] 2021 Dec; Vol. 10 (1), pp. 982-993.