Zobrazeno 1 - 10
of 43
pro vyhledávání: '"Jun Teramoto"'
Autor:
Ikki Kobayashi, Kenji Mochizuki, Jun Teramoto, Sousuke Imamura, Kazuhiro Takaya, Akira Ishihama, Tomohiro Shimada
Publikováno v:
International Journal of Molecular Sciences, Vol 23, Iss 11, p 6055 (2022)
Understanding the functional information of all genes and the biological mechanism based on the comprehensive genome regulation mechanism is an important task in life science. YgfI is an uncharacterized LysR family transcription factor in Escherichia
Externí odkaz:
https://doaj.org/article/d0fd3037a9f84c5480dc76bfaf9873ad
Autor:
Tyrrell Conway, James P. Creecy, Scott M. Maddox, Joe E. Grissom, Trevor L. Conkle, Tyler M. Shadid, Jun Teramoto, Phillip San Miguel, Tomohiro Shimada, Akira Ishihama, Hirotada Mori, Barry L. Wanner
Publikováno v:
mBio, Vol 5, Iss 4 (2014)
ABSTRACT We analyzed the transcriptome of Escherichia coli K-12 by strand-specific RNA sequencing at single-nucleotide resolution during steady-state (logarithmic-phase) growth and upon entry into stationary phase in glucose minimal medium. To genera
Externí odkaz:
https://doaj.org/article/20cb178a3e034f5dadbeafce05646043
Publikováno v:
Trends in Biotechnology. 35:983-996
Clustered regularly interspaced short palindromic repeats (CRISPR)-mediated manipulation of genomic information is becoming more versatile by combining nuclease-deficient CRISPR systems with a wide variety of effectors including base-editing deaminas
Autor:
Nili Ostrov, Julie E. Norville, Marc J. Lajoie, Natalie Cervantes, Marc Güell, Daniel B. Goodman, Michael G. Napolitano, Barry L. Wanner, Nicholas Conway, Minerva Zhou, Kerry Singh, Matthieu Landon, Gleb Kuznetsov, Ellen Shrock, Mark Moosburner, George M. Church, Benjamin W. Pruitt, Cameron L. Gardner, Alexandra Gonzales, Jun Teramoto, Gary Tyree
Publikováno v:
Science. 353:819-822
Recoding and repurposing genetic codons By recoding bacterial genomes, it is possible to create organisms that can potentially synthesize products not commonly found in nature. By systematic replacement of seven codons with synonymous alternatives fo
Autor:
Takahiro Kenmotsu, Yuko Yoshikawa, Masatoshi Ichikawa, Akira Ishihama, Kenichi Yoshikawa, Shun Watanabe, Jun Teramoto, Tadayuki Imanaka, Yuko T. Sato
Publikováno v:
Biophysical Journal. 105:1037-1044
The effects of nucleoid proteins Fis and Dps of Escherichia coli on the higher order structure of a giant DNA were studied, in which Fis and Dps are known to be expressed mainly in the exponential growth phase and stationary phase, respectively. Fis
Publikováno v:
Nucleic Acids Research
Dan is a transcription factor that regulates the ttd operon encoding tartrate dehydratase. During anaerobic conditions, its copy number increases by 100-fold, making Dan an abundant nucleoid-associated protein. However, little is known about the mode
Autor:
Masahiro Nakajima, Yoko Yamanishi, Toshio Fukuda, El Shimy H. Magdy, Ayako Kori, Fumihito Arai, Akira Ishihama, Akiko Hasegawa, Jun Teramoto
Publikováno v:
Genes to Cells. 15:1111-1122
Laboratory cultures of a single species of bacteria harboring the same genetic background include heterogeneous cell populations, each differing in apparent morphology and physiology, as found in natural environments. To get insights into difference
Publikováno v:
Nucleic Acids Research
A systematic search was performed for DNA-binding sequences of YgiP, an uncharacterized transcription factor of Escherichia coli, by using the Genomic SELEX. A total of 688 YgiP-binding loci were identified after genome-wide profiling of SELEX fragme
Publikováno v:
IEEE Transactions on NanoBioscience. 8:312-317
In this paper, we describe the fabrication of a temperature-controlled microfluidic chip for cell immobilization using a thermosensitive hydrogel of poly (N-isopropylacrylamide) (PNIPAAm). A mixture of PNIPAAm solution, yeast cells, and Calcein-AM fl
Autor:
Jun Teramoto, Ryutaro Utsumi, Kiyo Hirao, Akira Ishihama, Kaneyoshi Yamamoto, Hiroshi Ogasawara
Publikováno v:
Journal of Bacteriology. 186:8317-8325
In Escherichia coli K-12 overexpressing CpxR, transcription of the ung gene for uracil-DNA glycosylase was repressed, ultimately leading to the induction of mutation. Gel shift, DNase I footprinting, and in vitro transcription assays all indicated ne