Zobrazeno 1 - 10 of 18 pro vyhledávání: '"Julio O. Ortiz"'
1
Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms
Autor: Sahradha Albert, Ricardo D. Righetto, Emmanuel Moebel, Charles Kervrann, Tingying Peng, Antonio Martinez-Sanchez, Julio O. Ortiz, Wojciech Wietrzynski, Stefan Pfeffer, Lorenz Lamm, Damien Larivière, Benjamin D. Engel, Wolfgang Baumeister, Eric Fourmentin
Publikováno v: Nature Methods
Nature Methods, 2021, 18 (11), pp.1386-1394. ⟨10.1038/s41592-021-01275-4⟩
Nature Methods, Nature Publishing Group, 2021, 18 (11), pp.1386-1394. ⟨10.1038/s41592-021-01275-4⟩
Nature methods 18(11), 1386-1394 (2021). doi:10.1038/s41592-021-01275-4
Nat. Methods 18, 1386-1394 (2021)
BioImage Informatics 2021
BioImage Informatics 2021, Nov 2021, Paris, France. pp.1-43
BioImage Informatics 2021 (selected talk)
BioImage Informatics 2021 (selected talk), Nov 2021, Paris, France
Cryogenic electron tomography (cryo-ET) visualizes the 3D spatial distribution of macromolecules at nanometer resolution inside native cells. However, automated identification of macromolecules inside cellular tomograms is challenged by noise and rec
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa11ecb734146eafaab67196e1daef66
https://hdl.handle.net/21.11116/0000-0009-CAC0-A
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2
Deep Learning Improves Macromolecule Identification in 3D Cellular Cryo-Electron Tomograms
Autor: Charles Kervrann, Sahradha Albert, Julio O. Ortiz, Ricardo D. Righetto, Wojciech Wietrzynski, Benjamin D. Engel, Stefan Pfeffer, Emmanuel Moebel, Tingying Peng, Antonio Martinez-Sanchez, Lorenz Lamm, Eric Fourmentin, Damien Larivière, Wolfgang Baumeister
Cryo-electron tomography (cryo-ET) visualizes the 3D spatial distribution of macromolecules at nanometer resolution inside native cells. While this label-free cryogenic imaging technology produces data containing rich structural information, automate
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::6df3c85b6d2fd0a8c98d7d4be0e7d208
https://doi.org/10.1101/2020.04.15.042747
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3
Akademický článek
Noise contributions in an inducible genetic switch: a whole-cell simulation study.
Autor: Elijah Roberts, Andrew Magis, Julio O Ortiz, Wolfgang Baumeister, Zaida Luthey-Schulten
Publikováno v: PLoS Computational Biology, Vol 7, Iss 3, p e1002010 (2011)
Stochastic expression of genes produces heterogeneity in clonal populations of bacteria under identical conditions. We analyze and compare the behavior of the inducible lac genetic switch using well-stirred and spatially resolved simulations for Esch
Externí odkaz: https://doaj.org/article/4bc698d4b1a94e5aaf04d394ede16df7
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5
Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex
Autor: Arnaud Vanden Broeck, Christophe Lotz, Julio O. Ortiz, Valérie Lamour
Publikováno v: Nature Communications
Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
DNA gyrase is an essential enzyme involved in the homeostatic control of DNA supercoiling and the target of successful antibacterial compounds. Despite extensive studies, a detailed architecture of the full-length DNA gyrase from the model organism E
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b72a20544e3f3273edaf2b2009ee3311
http://europepmc.org/articles/PMC6821735
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6
The Native 3D Organization of Bacterial Polysomes
Autor: Wolfgang Baumeister, Julio O. Ortiz, Stephanie A. Etchells, Adrian H. Elcock, Florian Brandt, F. Ulrich Hartl
Publikováno v: Cell
Cell; Vol 136
SummaryRecent advances have led to insights into the structure of the bacterial ribosome, but little is known about the 3D organization of ribosomes in the context of translating polysomes. We employed cryoelectron tomography and a template-matching
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d477fa64b12b88a607ca1b5b5ffaff6c
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7
Mapping 70S ribosomes in intact cells by cryoelectron tomography and pattern recognition
Autor: Julio O. Ortiz, Alexandros Linaroudis, Friedrich Förster, Julia Kürner, Wolfgang Baumeister
Publikováno v: Journal of Structural Biology. 156:334-341
Cryoelectron tomography (CET) combines the potential of three-dimensional (3D) imaging with a close-to-life preservation of biological samples. It allows the examination of large and stochastically variable structures, such as organelles or whole cel
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5d6f6f14cd06cfe9e75db46ed6c85082
https://doi.org/10.1016/j.jsb.2006.04.014
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9
70 Three-dimensional arrangements of ribosomes inside fast growingE. colicells
Autor: F. Ulrich Hartl, Wolfgang Baumeister, Thomas Hoffmann, Julio O. Ortiz
Publikováno v: Journal of Biomolecular Structure and Dynamics. 33:45-46
Translating bacterial ribosomes can form structurally ordered polysomes. The three-dimensional (3D) organization of such polysomes has been described in solution using cryoelectron tomography (CET)...
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f944e6cc82703d8e90f1c5afec612282
https://doi.org/10.1080/07391102.2015.1032687
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10
MPSA short communications
Autor: Eugene M. Barnes, Patricia A. Calkin, Satoshi Kuroda, Shigemi Norioka, Masanori Mitta, Ikunoshin Kato, Fumio Sakiyama, Heinz Nika, David T. Chow, Daniel Hess, Edward J. Bures, Hamish D. Morrison, Ruedi Aebersold, G. Marius Clore, Angela M. Gronenborn, Bengt Persson, Patrick Argos, Peter James, Andrew C. Cannons, Larry P. Solomonson, Kenneth E. Dombrowski, William E. Moddeman, Stephen E. Wright, Winona C. Barker, David G. George, Subhendra N. Mattagajasingh, Hara P. Misra, Shuan Shian Huang, Jung San Huang, Y. C. Lee, Wolfgang H. Fischer, A. Grey Craig, Philip N. McFadden, Jonathan A. Lind-quist, M. Bartlet-Jones, W. Jeffery, H. F. Hansen, D. J. C. Pappin, Tomas Bergman, Lars Hjelmqvist, Mats Estonius, Hans Jörnvall, Donna S. Dorow, H. Tschesche, V. Knäuper, T. Kleine, P. Reinemer, S. Schnierer, F. Grams, W. Bode, Christopher Southan, Kenneth Fantom, Patric Lavery, J. B. C. Findlay, D. Akrigg, T. K. Attwood, M. J. Beck, A. J. Bleasby, A. C. T. North, D. J. Parry-Smith, D. N. Perkins, A. Aitken, Y. Patel, H. Martin, D. Jones, K. Robinson, J. Madrazo, S. Howell, Tom Yungwirth, Michael Affolter, Lawrence Amankwa, Harold A. Scheraga, Chao -Yuh Yang, Natalia V. Valentinova, Manlan Yang, Zi -Wei Gu, Antonio M. Gotto, Norman J. Dovichi, Karen C. Waldron, Min Chen, Ian Ireland, Akira Omori, Sachiyo Yoshida, Johann Schaller, Stephan Lengweiler, Egon E. Rickli, José Bubis, Julio O. Ortiz, Carolina Möller, Enrique J. Millán, Victoria L. Boyd, MeriLisa Bozzini, Jindong Zhao, Robert J. DeFranco, Pau -Miau Yuan, G. Marc Loudon, Duy Nguyen, Masaharu Kamo, Takao Kawakami, Norifumi Miyatake, Akira Tsugita, Keiji Takamoto, Kazuo Satake, Oliver Bischof, Mirko Hechenberger, Bernd Thiede, Volker Kruft, Brigitte Wittmann-Liebold, Albrecht Otto, Rainer Benndorf, Peter Jungblut, Monika Ühlein, Henning Urlaub, Rita Berhardt, Regine Kraft, Heike Uhlmann, Vita Beckert, Toshifumi Akizawa, Takaaki Ayabe, Motomi Matsukawa, Michiyasu Itoh, Masatoshi Nishi, Hiroshi Sato, Motoharu Seiki, Masanori Yoshioka, Michal Lebl, Viktor Krchňák, Nikolai F. Sepetov, Petr Kočiš, Marcel Pátek, Zuzana Flegelová, Ronald Ferguson, Kit S. Lam, Robert L. Moritz, James Eddes, Hong Ji, Gavin E. Reid, Richard J. Simpson, William Seffens, C. Dale Poulter, Julia M. Dolence, Pamela D. Bond, Kiyoshi Nokihara, Kazuo Ikegaya, Naoki Morita, Takao Ohmura, S. I. Salikhov, N. J. Sagdiev, A. S. Korneev, Behzod Z. Dolimbek, M. Zhouhair Atassi, J. S. Rosenberg, Z. Yun, P. R. Wyde, M. Z. Atassi, Simon J. Gaskell, Kalyan Rao Anumula, David P. Goldenberg, Ettore Appella, Michelle Fiscella, Nicola Zambrano, Stephen J. Ullrich, Kazuyasu Sakaguchi, Hiroshi Sakamoto, Marc S. Lewis, David Lin, W. Edward Mercer, Carl W. Anderson, Marjorie A. Connelly, Hong Zhang, John D. Sipley, Susan P. Lees-Miller, Stephen P. Jackson, Yong-hong Xie, Jun A. Quion, Chao-yuh Yang, W. F. Brandt, H. Alk, R. Bhaskaran, Chin Yu, C. C. Yang, Agnes H. Henschen, Keith Ashman, Matthias Mann, Juan Guevara, Hung Michael Nguyen, Daniel B. Davison, Joel D. Morrisett, Richard N. Perham, Donald A. Marvin, Martyn F. Symmons, Tamsin D. Terry, Z. H. Beg, J. A. Stonik, J. M. Hoeg, H. B. Brewer, Boris M. Gorovits, C. S. Raman, Paul M. Horowtiz
Publikováno v: Journal of Protein Chemistry. 13:431-512
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::5ef34d6537f2c82a8b9b3644d6d48729
https://doi.org/10.1007/bf01898855
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