Zobrazeno 1 - 10
of 183
pro vyhledávání: '"Julio Collado-Vides"'
Autor:
Paloma Lara, Socorro Gama-Castro, Heladia Salgado, Claire Rioualen, Víctor H. Tierrafría, Luis J. Muñiz-Rascado, César Bonavides-Martínez, Julio Collado-Vides
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
Post-genomic implementations have expanded the experimental strategies to identify elements involved in the regulation of transcription initiation. Here, we present for the first time a detailed analysis of the sources of knowledge supporting the col
Externí odkaz:
https://doaj.org/article/7c4732f27160417f9f3849cac9c17510
Autor:
Georgette Femerling, Socorro Gama-Castro, Paloma Lara, Daniela Ledezma-Tejeida, Víctor H. Tierrafría, Luis Muñiz-Rascado, César Bonavides-Martínez, Julio Collado-Vides
Publikováno v:
Frontiers in Bioengineering and Biotechnology, Vol 10 (2022)
In free-living bacteria, the ability to regulate gene expression is at the core of adapting and interacting with the environment. For these systems to have a logic, a signal must trigger a genetic change that helps the cell to deal with what implies
Externí odkaz:
https://doaj.org/article/ff54d2615df44616840f2885e71b567b
Publikováno v:
Frontiers in Physiology, Vol 13 (2022)
Knowledge of biological organisms at the molecular level that has been gathered is now organized into databases, often within ontological frameworks. To enable computational comparisons of annotations across different genomes and organisms, controlle
Externí odkaz:
https://doaj.org/article/4cf4e48ad0e844dcafcfe22f891d27db
Autor:
Ingrid M. Keseler, Socorro Gama-Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
The EcoCyc model-organism database collects and summarizes experimental data for Escherichia coli K-12. EcoCyc is regularly updated by the manual curation of individual database entries, such as genes, proteins, and metabolic pathways, and by the pro
Externí odkaz:
https://doaj.org/article/3e5385087dd74fe2b99b461d7b140fcf
Autor:
Oscar Lithgow-Serrano, Socorro Gama-Castro, Cecilia Ishida-Gutiérrez, Citlalli Mejía-Almonte, Víctor H. Tierrafría, Sara Martínez-Luna, Alberto Santos-Zavaleta, David Velázquez-Ramírez, Julio Collado-Vides
Publikováno v:
Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-14 (2019)
Abstract Background The ability to express the same meaning in different ways is a well-known property of natural language. This amazing property is the source of major difficulties in natural language processing. Given the constant increase in publi
Externí odkaz:
https://doaj.org/article/f133b23bf096497ca7efcbaa05005aec
Autor:
Alberto Santos-Zavaleta, Mishael Sánchez-Pérez, Heladia Salgado, David A. Velázquez-Ramírez, Socorro Gama-Castro, Víctor H. Tierrafría, Stephen J. W. Busby, Patricia Aquino, Xin Fang, Bernhard O. Palsson, James E. Galagan, Julio Collado-Vides
Publikováno v:
BMC Biology, Vol 16, Iss 1, Pp 1-12 (2018)
Abstract Background Our understanding of the regulation of gene expression has benefited from the availability of high-throughput technologies that interrogate the whole genome for the binding of specific transcription factors and gene expression pro
Externí odkaz:
https://doaj.org/article/62842013a20a414b8d96469a17759c51
Publikováno v:
Frontiers in Microbiology, Vol 8 (2017)
In the face of changes in their environment, bacteria adjust gene expression levels and produce appropriate responses. The individual layers of this process have been widely studied: the transcriptional regulatory network describes the regulatory int
Externí odkaz:
https://doaj.org/article/a26b28d115f146acb6a187bacb486027
Publikováno v:
PLoS ONE, Vol 12, Iss 4, p e0174887 (2017)
In prokaryotes, genomic distance is a feature that in addition to coregulation affects coexpression. Several observations, such as genomic clustering of highly coexpressed small regulons, support the idea that coexpression behavior of coregulated gen
Externí odkaz:
https://doaj.org/article/ac77a842847d46aabb0a93b0a6144a46
Autor:
Osbaldo Resendis-Antonio, Jennifer L Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø Palsson
Publikováno v:
PLoS Computational Biology, Vol 3, Iss 10, Pp 1887-1895 (2007)
Rhizobiaceas are bacteria that fix nitrogen during symbiosis with plants. This symbiotic relationship is crucial for the nitrogen cycle, and understanding symbiotic mechanisms is a scientific challenge with direct applications in agronomy and plant d
Externí odkaz:
https://doaj.org/article/b939caf7b0884cc8aae350d1795f18ea
Autor:
Rafael Palacios, Julio Collado-Vides
Publikováno v:
PLoS Computational Biology, Vol 3, Iss 9, Pp 1670-1673 (2007)
Externí odkaz:
https://doaj.org/article/a8cd6ab040624185aefc4b5f3078eaac