Zobrazeno 1 - 10
of 32
pro vyhledávání: '"Julien Boutte"'
Autor:
Julien Boutte, Loeiz Maillet, Thomas Chaussepied, Sébastien Letort, Jean-Marc Aury, Caroline Belser, Franz Boideau, Anael Brunet, Olivier Coriton, Gwenaëlle Deniot, Cyril Falentin, Virginie Huteau, Maryse Lodé-Taburel, Jérôme Morice, Gwenn Trotoux, Anne-Marie Chèvre, Mathieu Rousseau-Gueutin, Julie Ferreira de Carvalho
Publikováno v:
Frontiers in Plant Science, Vol 11 (2020)
Traditionally, reference genomes in crop species rely on the assembly of one accession, thus occulting most of intraspecific diversity. However, rearrangements, gene duplications, and transposable element content may have a large impact on the genomi
Externí odkaz:
https://doaj.org/article/66b622a6ded94448a2da0db8bbc2f766
Autor:
Julien Boutte, Benoît Aliaga, Oscar Lima, Julie Ferreira de Carvalho, Abdelkader Ainouche, Jiri Macas, Mathieu Rousseau-Gueutin, Olivier Coriton, Malika Ainouche, Armel Salmon
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 6, Iss 1, Pp 29-40 (2016)
Gene and whole-genome duplications are widespread in plant nuclear genomes, resulting in sequence heterogeneity. Identification of duplicated genes may be particularly challenging in highly redundant genomes, especially when there are no diploid pare
Externí odkaz:
https://doaj.org/article/b2fe2d8ff70649638bedff00f23467fe
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2512
Hypothesized evolutionary insertions and deletions in nucleic acid sequences (indels) contain significant phylogenetic information and can be integrated in phylogenomic analyses. However, assemblies of short reads obtained from next-generation sequen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::50765dd701271b2d78fe87db197812fc
https://pubmed.ncbi.nlm.nih.gov/35817999
https://pubmed.ncbi.nlm.nih.gov/35817999
Publikováno v:
Methods in Molecular Biology ISBN: 9781071624289
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a488230835ef4c38c8488507475c341e
https://doi.org/10.1007/978-1-0716-2429-6_4
https://doi.org/10.1007/978-1-0716-2429-6_4
Autor:
Julien Boutte, Malika L. Aïnouche, Armel Salmon, Ilia J. Leitch, Olivier Coriton, Delphine Giraud, Andrew R. Leitch, Virginie Huteau, Ales Kovarik, Oscar Lima
Publikováno v:
Plant Science
Plant Science, Elsevier, 2021, 302, pp.110671. ⟨10.1016/j.plantsci.2020.110671⟩
Plant Science, 2021, 302, pp.110671. ⟨10.1016/j.plantsci.2020.110671⟩
Plant Science, Elsevier, 2021, 302, pp.110671. ⟨10.1016/j.plantsci.2020.110671⟩
Plant Science, 2021, 302, pp.110671. ⟨10.1016/j.plantsci.2020.110671⟩
International audience; Repeated sequences and polyploidy play a central role in plant genome dynamics. Here, we analyze the evolutionary dynamics of repeats in tetraploid and hexaploid Spartina species that diverged during the last 10 million years
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ade42925ee8c4bdcef15398ed8ffdc8
https://hal.archives-ouvertes.fr/hal-03101741/document
https://hal.archives-ouvertes.fr/hal-03101741/document
Autor:
Gwenn Trotoux, Jean-Marc Aury, Loeiz Maillet, Anael Brunet, Franz Boideau, Virginie Huteau, Jérôme Morice, Mathieu Rousseau-Gueutin, Olivier Coriton, Cyril Falentin, Sébastien Letort, Julien Boutte, Maryse Lodé-Taburel, Anne-Marie Chèvre, Gwenaëlle Deniot, Julie Ferreira de Carvalho, Thomas Chaussepied, Caroline Belser
Publikováno v:
Frontiers in Plant Science
Frontiers in Plant Science, Frontiers, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩
Frontiers in Plant Science, Vol 11 (2020)
Frontiers in Plant Science, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩
Frontiers in Plant Science, Frontiers, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩
Frontiers in Plant Science, Vol 11 (2020)
Frontiers in Plant Science, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩
International audience; Traditionally, reference genomes in crop species rely on the assembly of one accession, thus occulting most of intraspecific diversity. However, rearrangements, gene duplications, and transposable element content may have a la
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ceb1d13f673be705a8b44e5f60bee31
https://hal.inrae.fr/hal-03137565
https://hal.inrae.fr/hal-03137565
Publikováno v:
Molecular Phylogenetics and Evolution
Molecular Phylogenetics and Evolution, 2019, 139, pp.106534. ⟨10.1016/j.ympev.2019.106534⟩
Molecular Phylogenetics and Evolution, Elsevier, 2019, 139, pp.106534. ⟨10.1016/j.ympev.2019.106534⟩
Molecular Phylogenetics and Evolution, 2019, 139, pp.106534. ⟨10.1016/j.ympev.2019.106534⟩
Molecular Phylogenetics and Evolution, Elsevier, 2019, 139, pp.106534. ⟨10.1016/j.ympev.2019.106534⟩
International audience; Targeted genome sequencing approaches allow characterization of evolutionary relationships using a considerable number of nuclear genes and informative characters. However, most phylogenomic analyses only utilize single nucleo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d8d663418f3b749db12ef32c22fc7772
https://pubmed.ncbi.nlm.nih.gov/31212081
https://pubmed.ncbi.nlm.nih.gov/31212081
Autor:
Julien Boutte, Mark Fishbein, Shannon C. K. Straub, Aaron Liston, Richard Cronn, Kimberly Hansen
Publikováno v:
American journal of botany. 105(3)
Premise of the study Leaf surface traits, such as trichome density and wax production, mediate important ecological processes such as anti-herbivory defense and water-use efficiency. We present a phylogenetic analysis of Asclepias plastomes as a fram
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6882ebbab55fbfb2b899fa60ac36ff03
https://pubmed.ncbi.nlm.nih.gov/29693728
https://pubmed.ncbi.nlm.nih.gov/29693728
Autor:
Abbey Foote, Shannon C. K. Straub, Tatyana Livshultz, Mark Fishbein, André Olmos Simões, Angela McDonnell, Julien Boutte
Publikováno v:
American journal of botany. 105(3)
PREMISE OF THE STUDY We provide the largest phylogenetic analyses to date of Apocynaceae in terms of taxa and molecular data as a framework for analyzing the evolution of vegetative and reproductive traits. METHODS We produced maximum-likelihood phyl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df3c30a0c4c83c3cbdf68795011246bc
https://pubmed.ncbi.nlm.nih.gov/29733432
https://pubmed.ncbi.nlm.nih.gov/29733432
Autor:
Houda Chelaifa, Armel Salmon, Malika L. Aïnouche, Julie Ferreira de Carvalho, Julien Boutte, Pierre Bourdaud, Kader Ainouche
Publikováno v:
Plant Systematics and Evolution
Plant Systematics and Evolution, Springer Verlag (Germany), 2017, 303 (8), pp.1061-1079. ⟨10.1007/s00606-017-1446-3⟩
Plant Systematics and Evolution, 2017, 303 (8), pp.1061-1079. ⟨10.1007/s00606-017-1446-3⟩
Plant Systematics and Evolution, 303(8), 1061-1079. Springer Wien
Plant Systematics and Evolution, Springer Verlag (Germany), 2017, 303 (8), pp.1061-1079. ⟨10.1007/s00606-017-1446-3⟩
Plant Systematics and Evolution, 2017, 303 (8), pp.1061-1079. ⟨10.1007/s00606-017-1446-3⟩
Plant Systematics and Evolution, 303(8), 1061-1079. Springer Wien
International audience; Allopolyploidy is a peculiar process entailing the cohabitation of two (or more) divergent genomes. Consequences on plant genomes are varied and can utlimately alter gene expression and regulatory interactions. Most studies ha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::260b8622eca7bed6b21982f5b792a759
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01631555
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01631555