Will Transformers change gastrointestinal endoscopic image analysis? A comparative analysis between CNNs and Transformers, in terms of performance, robustness and generalization.

Autor: Kusters CHJ; Department of Electrical Engineering, Video Coding & Architectures, Eindhoven University of Technology, Eindhoven, The Netherlands. Electronic address: c.h.j.kusters@tue.nl., Jaspers TJM; Department of Electrical Engineering, Video Coding & Architectures, Eindhoven University of Technology, Eindhoven, The Netherlands., Boers TGW; Department of Electrical Engineering, Video Coding & Architectures, Eindhoven University of Technology, Eindhoven, The Netherlands., Jong MR; Department of Gastroenterology and Hepatology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands., Jukema JB; Department of Gastroenterology and Hepatology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands., Fockens KN; Department of Gastroenterology and Hepatology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands., de Groof AJ; Department of Gastroenterology and Hepatology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands., Bergman JJ; Department of Gastroenterology and Hepatology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands., van der Sommen F; Department of Electrical Engineering, Video Coding & Architectures, Eindhoven University of Technology, Eindhoven, The Netherlands., De With PHN; Department of Electrical Engineering, Video Coding & Architectures, Eindhoven University of Technology, Eindhoven, The Netherlands.

Publikováno v: Medical image analysis [Med Image Anal] 2024 Sep 16; Vol. 99, pp. 103348. Date of Electronic Publication: 2024 Sep 16.

Foundation models in gastrointestinal endoscopic AI: Impact of architecture, pre-training approach and data efficiency.

Autor: Boers TGW; Eindhoven University of Technology, Groene Loper 3, 5612 AE Eindhoven, The Netherlands. Electronic address: t.boers@tue.nl., Fockens KN; Amsterdam UMC, Location VUmc, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands., van der Putten JA; Eindhoven University of Technology, Groene Loper 3, 5612 AE Eindhoven, The Netherlands., Jaspers TJM; Eindhoven University of Technology, Groene Loper 3, 5612 AE Eindhoven, The Netherlands., Kusters CHJ; Eindhoven University of Technology, Groene Loper 3, 5612 AE Eindhoven, The Netherlands., Jukema JB; Amsterdam UMC, Location VUmc, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands., Jong MR; Amsterdam UMC, Location VUmc, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands., Struyvenberg MR; Amsterdam UMC, Location VUmc, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands., de Groof J; Amsterdam UMC, Location VUmc, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands., Bergman JJ; Amsterdam UMC, Location VUmc, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands., de With PHN; Eindhoven University of Technology, Groene Loper 3, 5612 AE Eindhoven, The Netherlands., van der Sommen F; Eindhoven University of Technology, Groene Loper 3, 5612 AE Eindhoven, The Netherlands.

Publikováno v: Medical image analysis [Med Image Anal] 2024 Dec; Vol. 98, pp. 103298. Date of Electronic Publication: 2024 Aug 12.

A deep learning system for detection of early Barrett's neoplasia: a model development and validation study.

Autor: Fockens KN; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., Jong MR; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., Jukema JB; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., Boers TGW; Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., Kusters CHJ; Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., van der Putten JA; Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., Pouw RE; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., Duits LC; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., Montazeri NSM; Biostatistics Unit, Department of Gastroenterology and Hepatology, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., van Munster SN; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands; Department of Gastroenterology and Hepatology, St Antonius Hospital, Nieuwegein, Netherlands., Weusten BLAM; Department of Gastroenterology and Hepatology, UMC Utrecht, University of Utrecht, Utrecht, Netherlands; Department of Gastroenterology and Hepatology, St Antonius Hospital, Nieuwegein, Netherlands., Alvarez Herrero L; Department of Gastroenterology and Hepatology, St Antonius Hospital, Nieuwegein, Netherlands., Houben MHMG; Department of Gastroenterology and Hepatology, HagaZiekenhuis Den Haag, Den Haag, Netherlands., Nagengast WB; Department of Gastroenterology and Hepatology, UMC Groningen, University of Groningen, Groningen, Netherlands., Westerhof J; Department of Gastroenterology and Hepatology, UMC Groningen, University of Groningen, Groningen, Netherlands., Alkhalaf A; Department of Gastroenterology and Hepatology, Isala Hospital Zwolle, Zwolle, Netherlands., Mallant-Hent RC; Department of Gastroenterology and Hepatology, Flevoziekenhuis Almere, Almere, Netherlands., Scholten P; Department of Gastroenterology and Hepatology, Onze Lieve Vrouwe Gasthuis, Amsterdam, Netherlands., Ragunath K; Department of Gastroenterology and Hepatology, Royal Perth Hospital, Curtin University, Perth, WA, Australia., Seewald S; Department of Gastroenterology and Hepatology, Hirslanden Klinik, Zurich, Switzerland., Elbe P; Department of Digestive Diseases, Karolinska University Hospital, Stockholm, Sweden; Division of Surgery, Department of Clinical Science, Intervention and Technology, Karolinska Institutet, Stockholm, Sweden., Baldaque-Silva F; Department of Digestive Diseases, Karolinska University Hospital, Stockholm, Sweden; Center for Advanced Endoscopy Carlos Moreira da Silva, Gastroenterology Department, Pedro Hispano Hospital, Matosinhos, Portugal., Barret M; Department of Gastroenterology and Hepatology, Cochin Hospital Paris, Paris, France., Ortiz Fernández-Sordo J; Department of Gastroenterology and Hepatology, Nottingham University Hospitals NHS Trust, Nottingham, UK., Villarejo GM; Department of Gastroenterology and Hepatology, Nottingham University Hospitals NHS Trust, Nottingham, UK., Pech O; Department of Gastroenterology and Hepatology, St John of God Hospital, Regensburg, Germany., Beyna T; Department of Gastroenterology and Hepatology, Evangalisches Krankenhaus Düsseldorf, Düsseldorf, Germany., van der Sommen F; Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., de With PH; Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands., de Groof AJ; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands., Bergman JJ; Department of Gastroenterology and Hepatology, Amsterdam Gastroenterology, Endocrinology and Metabolism, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands. Electronic address: j.j.bergman@amsterdamumc.nl.

Publikováno v: The Lancet. Digital health [Lancet Digit Health] 2023 Dec; Vol. 5 (12), pp. e905-e916.

Can Previous Associations of Single Nucleotide Polymorphisms in the TLR2 , NOD1 , CXCR5 , and IL10 Genes in the Susceptibility to and Severity of Chlamydia trachomatis Infections Be Confirmed?

Autor: Jukema JB; Laboratory of Immunogenetics, Department Medical Microbiology and Infection Control, Amsterdam UMC, Location AMC, 1100 DD Amsterdam, The Netherlands., Hoenderboom BM; Laboratory of Immunogenetics, Department Medical Microbiology and Infection Control, Amsterdam UMC, Location AMC, 1100 DD Amsterdam, The Netherlands.; Epidemiology and Surveillance Unit, Centre for Infectious Disease Control, National Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands., van Benthem BHB; Epidemiology and Surveillance Unit, Centre for Infectious Disease Control, National Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands., van der Sande MAB; Epidemiology and Surveillance Unit, Centre for Infectious Disease Control, National Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands.; Institute of Tropical Medicine, Department Public Health, 2000 Antwerp, Belgium.; Global Health Julius Centre for Health Sciences and Primary Care, University Medical Centre Utrecht, 3508 AB Utrecht, The Netherlands., de Vries HJC; Amsterdam UMC, University of Amsterdam, Department of Dermatology, Amsterdam Institute for Infection and Immunity (AI&II), Location Academic Medical Centre, 1100 DD Amsterdam, The Netherlands.; Department of Infectious Diseases, STI Outpatient Clinic, Public Health Service, 1018 WT Amsterdam, The Netherlands., Hoebe CJPA; Department of Sexual Health, Infectious Diseases and Environmental Health, South Limburg Public Health Service (GGD South Limburg), 6160 HA Geleen, The Netherlands.; Department of Social Medicine and Medical Microbiology, Care and Public Health Research Institute (CAPHRI), Maastricht University Medical Centre (MUMC+), 6200 MD Maastricht, The Netherlands., Dukers-Muijrers NHTM; Department of Sexual Health, Infectious Diseases and Environmental Health, South Limburg Public Health Service (GGD South Limburg), 6160 HA Geleen, The Netherlands.; Department of Social Medicine and Medical Microbiology, Care and Public Health Research Institute (CAPHRI), Maastricht University Medical Centre (MUMC+), 6200 MD Maastricht, The Netherlands., Bax CJ; Department of Obstetrics and Gynaecology, Amsterdam UMC, Location AMC, University of Amsterdam, 1100 DD Amsterdam, The Netherlands., Morré SA; Laboratory of Immunogenetics, Department Medical Microbiology and Infection Control, Amsterdam UMC, Location AMC, 1100 DD Amsterdam, The Netherlands.; Institute for Public Health Genomics (IPHG), Department of Genetics and Cell Biology, Research School GROW (School for Oncology & Developmental Biology), Faculty of Health, Medicine & Life Sciences, University of Maastricht, 6229 ER Maastricht, The Netherlands., Ouburg S; Laboratory of Immunogenetics, Department Medical Microbiology and Infection Control, Amsterdam UMC, Location AMC, 1100 DD Amsterdam, The Netherlands.

Publikováno v: Pathogens (Basel, Switzerland) [Pathogens] 2021 Jan 07; Vol. 10 (1). Date of Electronic Publication: 2021 Jan 07.

Waterpipe smoking: not necessarily less hazardous than cigarette smoking : Possible consequences for (cardiovascular) disease.

Autor: Jukema JB; Medical Faculty, Free University, Amsterdam, the Netherlands, jelmerbjukema@outlook.com., Bagnasco DE, Jukema RA

Publikováno v: Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation [Neth Heart J] 2014 Mar; Vol. 22 (3), pp. 91-9.