The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden.

Autor: Díaz de Ståhl T; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden. teresita.diaz.de.stahl@ki.se.; Clinical Pathology and Cancer Diagnostics, Karolinska University Hospital, Stockholm, Sweden. teresita.diaz.de.stahl@ki.se., Shamikh A; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.; Clinical Pathology and Cancer Diagnostics, Karolinska University Hospital, Stockholm, Sweden., Mayrhofer M; Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden., Juhos S; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Basmaci E; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Prochazka G; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Garcia M; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Somarajan PR; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Zielinska-Chomej K; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Illies C; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.; Clinical Pathology and Cancer Diagnostics, Karolinska University Hospital, Stockholm, Sweden., Øra I; Department of Paediatric Haematology Oncology and Immunology, Skåne University Hospital Lund, Lund, Sweden., Siesjö P; Department of Clinical Sciences Lund, Department of Neurosurgery, Lund University, Skåne University Hospital, Lund, Sweden., Sandström PE; Department of Clinical Sciences, Pediatrics, Umeå University, Umeå, Sweden., Stenman J; Childhood Cancer Research Unit, Department of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden., Sabel M; Childhood Cancer Centre, Queen Silvia Children's Hospital, Sahlgrenska University Hospital, Gothenburg, Sweden., Gustavsson B; Department of Neurosurgery, Karolinska University Hospital, Stockholm, Sweden., Kogner P; Childhood Cancer Research Unit, Department of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden., Pfeifer S; Pediatric Hematology/Oncology, Department of Women's and Children's Health, Uppsala University, Uppsala, Sweden., Ljungman G; Pediatric Hematology/Oncology, Department of Women's and Children's Health, Uppsala University, Uppsala, Sweden., Sandgren J; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.; Clinical Pathology and Cancer Diagnostics, Karolinska University Hospital, Stockholm, Sweden., Nistér M; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.

Publikováno v: Journal of translational medicine [J Transl Med] 2023 May 23; Vol. 21 (1), pp. 342. Date of Electronic Publication: 2023 May 23.

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.

Autor: Garcia M; Department of Oncology-Pathology, Karolinska Institutet, J5:30 BioClinicum, Visionsgatan 4, Karolinska University Hospital at Solna, Solna, 17164, Sweden., Juhos S; Department of Oncology-Pathology, Karolinska Institutet, J5:30 BioClinicum, Visionsgatan 4, Karolinska University Hospital at Solna, Solna, 17164, Sweden.; Department of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Box 1031, Solna, 17121, Sweden.; Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Husargatan 3, Uppsala, 752 37, Sweden., Larsson M; Department of Physics, Chemistry and Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Linköping University, Linköping, 58183, Sweden., Olason PI; Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Husargatan 3, Uppsala, 752 37, Sweden., Martin M; Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Box 1031, Solna, 17121, Sweden., Eisfeldt J; Clinical Genetics, Department of Molecular Medicine and Surgery, Karolinska Institutet, MMK L1:00, Karolinska University Hospital at Solna, Stockholm, 171 76, Sweden., DiLorenzo S; Department of Medical Sciences, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Husargatan 3, Uppsala, 752 37, Sweden., Sandgren J; Department of Oncology-Pathology, Karolinska Institutet, J5:30 BioClinicum, Visionsgatan 4, Karolinska University Hospital at Solna, Solna, 17164, Sweden., Díaz De Ståhl T; Department of Oncology-Pathology, Karolinska Institutet, J5:30 BioClinicum, Visionsgatan 4, Karolinska University Hospital at Solna, Solna, 17164, Sweden., Ewels P; Department of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Box 1031, Solna, 17121, Sweden., Wirta V; Department of Microbiology, Tumor and Cell Biology, Clinical Genomics Facility, Science for Life Laboratory, Karolinska Institutet, Box 1031, Solna, 171 21, Sweden., Nistér M; Department of Oncology-Pathology, Karolinska Institutet, J5:30 BioClinicum, Visionsgatan 4, Karolinska University Hospital at Solna, Solna, 17164, Sweden., Käller M; School of Engineering Sciences in Chemistry, Biotechnology and Health, Science for Life Laboratory, KTH Royal Institute of Technology, Box 1031, Solna, 17121, Sweden., Nystedt B; Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Husargatan 3, Uppsala, 752 37, Sweden.

Publikováno v: F1000Research [F1000Res] 2020 Jan 29; Vol. 9, pp. 63. Date of Electronic Publication: 2020 Jan 29 (Print Publication: 2020).

New antibacterial candidates against Acinetobacter baumannii discovered by in silico-driven chemogenomics repurposing.

Autor: Borges, Kellen Christina Malheiros^1,2 (AUTHOR), Costa, Vinícius Alexandre Fiaia³ (AUTHOR), Neves Junior, Bruno³ (AUTHOR), Kipnis, André¹ (AUTHOR) akipnis@ufg.br, Junqueira-Kipnis, Ana Paula¹ (AUTHOR)

Publikováno v: PLoS ONE. 9/26/2024, Vol. 19 Issue 9, p1-25. 25p.

Genomic Insights into Idiopathic Granulomatous Mastitis through Whole-Exome Sequencing: A Case Report of Eight Patients.

Autor: Ong, Seeu Si^1,2 (AUTHOR) ong_seeu_si@gis.a-star.edu.sg, Ho, Peh Joo^1,2,3 (AUTHOR), Khng, Alexis Jiaying¹ (AUTHOR), Tan, Benita Kiat Tee^4,5,6 (AUTHOR), Tan, Qing Ting⁷ (AUTHOR), Tan, Ern Yu^8,9,10 (AUTHOR), Tan, Su-Ming¹¹ (AUTHOR), Putti, Thomas Choudary¹² (AUTHOR), Lim, Swee Ho⁷ (AUTHOR), Tang, Ee Ling Serene¹³ (AUTHOR), Li, Jingmei^1,2 (AUTHOR) lijm1@gis.a-star.edu.sg, Hartman, Mikael^2,3,14 (AUTHOR)

Publikováno v: International Journal of Molecular Sciences. Aug2024, Vol. 25 Issue 16, p9058. 17p.

MolScore: a scoring, evaluation and benchmarking framework for generative models in de novo drug design.

Autor: Thomas, Morgan¹ (AUTHOR) morganthomas263@gmail.com, O'Boyle, Noel M.² (AUTHOR), Bender, Andreas¹ (AUTHOR), De Graaf, Chris² (AUTHOR)

Publikováno v: Journal of Cheminformatics. 5/30/2024, Vol. 16 Issue 1, p1-20. 20p.