Fragmented habitat compensates for the adverse effects of genetic bottleneck

Autor: Ari Löytynoja, Pasi Rastas, Mia Valtonen, Juhana Kammonen, Liisa Holm, Morten Tange Olsen, Lars Paulin, Jukka Jernvall, Petri Auvinen

Publikováno v: Löytynoja, A, Rastas, P, Valtonen, M, Kammonen, J, Holm, L, Olsen, M T, Paulin, L, Jernvall, J & Auvinen, P 2023, ' Fragmented habitat compensates for the adverse effects of genetic bottleneck ', Current Biology, vol. 33, no. 6, pp. 1009-1018.e7 . https://doi.org/10.1016/j.cub.2023.01.040

In the face of the human-caused biodiversity crisis, understanding the theoretical basis of conservation ef-forts of endangered species and populations has become increasingly important. According to population genetics theory, population subdivision

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e0d40f0221103c21d6a7530a8d5832c
https://doi.org/10.1101/2022.04.05.487133

Author Correction: Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Autor: Balamuralikrishna Jayaprakash, Kurt V. Fagerstedt, Jorma Vahala, Saijaliisa Kangasjärvi, Courtney A. Hollender, Moona Rahikainen, Peter J. Gollan, Tiina Blomster, Ville Pennanen, Alexey Shapiguzov, Matti Rousi, Adrien Gauthier, Sirpa Kärenlampi, Raili Ruonala, Timo Sipilä, Mikael Brosché, Leila Kauppinen, Juan de Dios Barajas-López, Tuula Puhakainen, Kirk Overmyer, Airi Lamminmäki, Omid Safronov, Ari Pekka Mähönen, Kean-Jin Lim, Annikki Welling, Ykä Helariutta, Martin Lascoux, Colin T. Kelleher, Ali Amiryousefi, Katriina Mouhu, Fred O. Asiegbu, Johanna Leppälä, Ülo Niinemets, Pezhman Safdari, Pauliina Halimaa, Sari Kontunen-Soppela, Gugan Eswaran, Pekka Heino, Juan Antonio Alonso Serra, Fuqiang Cui, Juha Mikola, Jarkko Salojärvi, Lidia Vetchinnikova, Sacha Escamez, Hiroaki Fujii, Daniel Blande, Juha Immanen, Péter Poczai, Viivi Ahonen, Alan H. Schulman, Pasi Rastas, Chris Dardick, Matleena Punkkinen, Kristiina Himanen, Jaakko Tanskanen, Christiaan van der Schoot, Sanna Ehonen, Elina Oksanen, Anna Kärkönen, Victor A. Albert, Suvi Sutela, Olli-Pekka Smolander, Lee Macpherson, Michael Wrzaczek, E. Tapio Palva, Maija Sierla, Boy J.H.M. Possen, Juhana Kammonen, Sitaram Rajaraman, Paula Elomaa, Tianying Lan, Enjun Xu, Olga Blokhina, Suvi K. Broholm, Kaisa Nieminen, J. Patrik Koskinen, Jaakko Kangasjärvi, Risto Hagqvist, Lars Paulin, Arja Tervahauta, Aleksia Vaattovaara, Andriy Kovalchuk, Leila Pazouki, Petri Auvinen, Teemu H. Teeri

Publikováno v: Nature Genetics
Nature Genetics, Nature Publishing Group, 2019, 51 (7), pp.1187-1189. ⟨10.1038/s41588-019-0442-7⟩

Silver birch (Betula pendula) is a pioneer boreal tree that can be induced to flower within 1 year. Its rapid life cycle, small (440-Mb) genome, and advanced germplasm resources make birch an attractive model for forest biotechnology. We assembled an

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0b371b4d9c5152fd7b37a5ce2f1425e
https://hal.archives-ouvertes.fr/hal-02461051

Bracketing phenotypic limits of mammalian hybridization

Autor: Olli-Pekka Smolander, Ian J. Corfe, Mia Valtonen, Jukka Jernvall, Yoland Savriama, Sylvain Gerber, Pasi Rastas, Liisa Holm, Lars Paulin, Ari Löytynoja, Annina Lyyski, Petri Auvinen, Teemu J. Häkkinen, Isaac Salazar-Ciudad, Juhana Kammonen

An increasing number of mammalian species have been shown to have a history of hybridization and introgression based on genetic analyses. Only relatively few fossils, however, preserve genetic material and morphology must be used to identify the spec

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9971850c223e184df0bf33a2d3f0a937

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Autor: Airi Lamminmäki, Colin T. Kelleher, Petri Auvinen, Olga Blokhina, Peter J. Gollan, Jaakko Kangasjärvi, Pekka Heino, Hiroaki Fujii, Suvi K. Broholm, Mikael Brosché, Adrien Gauthier, Victor A. Albert, Juhana Kammonen, Suvi Sutela, Leila Pazouki, Olli-Pekka Smolander, Paula Elomaa, Tianying Lan, Ykä Helariutta, Sitaram Rajaraman, Risto Hagqvist, Ali Amiryousefi, Péter Poczai, Maija Sierla, Viivi Ahonen, Jorma Vahala, Fred O. Asiegbu, Enjun Xu, Leila Kauppinen, Jarkko Salojärvi, Ülo Niinemets, Sari Kontunen-Soppela, Alan H. Schulman, Arja Tervahauta, Aleksia Vaattovaara, Kristiina Himanen, Lars Paulin, Johanna Leppälä, E. Tapio Palva, Annikki Welling, Jaakko Tanskanen, Juha Mikola, Daniel Blande, Raili Ruonala, Teemu H. Teeri, Christiaan van der Schoot, Sanna Ehonen, Kaisa Nieminen, Fuqiang Cui, Kurt V. Fagerstedt, Katriina Mouhu, Michael Wrzaczek, Pezhman Safdari, Gugan Eswaran, Andriy Kovalchuk, Elina Oksanen, Lee Macpherson, Pauliina Halimaa, Anna Kärkönen, Kean-Jin Lim, Balamuralikrishna Jayaprakash, J. Patrik Koskinen, Chris Dardick, Matleena Punkkinen, Saijaliisa Kangasjärvi, Juan de Dios Barajas-López, Pasi Rastas, Ari Pekka Mähönen, Courtney A. Hollender, Tiina Blomster, Timo Sipilä, Lidia Vetchinnikova, Tuula Puhakainen, Moona Rahikainen, Sirpa Kärenlampi, Omid Safronov, Ville Pennanen, Alexey Shapiguzov, Matti Rousi, Sacha Escamez, Juha Immanen, Kirk Overmyer, Martin Lascoux, Juan Antonio Alonso Serra, Boy J.H.M. Possen

Publikováno v: Nature Genetics
Nature Genetics, Nature Publishing Group, 2017, 49 (6), pp.904-912. ⟨10.1038/ng.3862⟩

Silver birch (Betula pendula) is a pioneer boreal tree that can be induced to flower within 1 year. Its rapid life cycle, small (440-Mb) genome, and advanced germplasm resources make birch an attractive model for forest biotechnology. We assembled an

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44d1101beee98bab9541477cd7780607
https://hal.archives-ouvertes.fr/hal-02461071

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Autor: Patrik Koskinen, Pedro A. B. Pereira, Olli-Pekka Smolander, Jukka Jernvall, Pia Laine, Petri Auvinen, Lars Paulin, Juhana Kammonen

Publikováno v: PLoS ONE, Vol 14, Iss 9, p e0216885 (2019)
PLoS ONE

Unknown sequences, or gaps, are present in many published genomes across public databases. Gap filling is an important finishing step in de novo genome assembly, especially in large genomes. The gap filling problem is nontrivial and while there are m

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4034a03e75482c90d23593c844049d17
https://doi.org/10.1371/journal.pone.0216885