Replication Study: Biomechanical remodeling of the microenvironment by stromal caveolin-1 favors tumor invasion and metastasis

Autor: Mee Rie Sheen, Jennifer L Fields, Brian Northan, Judith Lacoste, Lay-Hong Ang, Steven Fiering, Reproducibility Project: Cancer Biology

Publikováno v: eLife, Vol 8 (2019)

As part of the Reproducibility Project: Cancer Biology we published a Registered Report (Fiering et al., 2015) that described how we intended to replicate selected experiments from the paper ‘Biomechanical remodeling of the microenvironment by stro

Externí odkaz: https://doaj.org/article/f7f00516500a4cbf83d0625514846ee2

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

Autor: Maximiliaan Huisman, James J. Chambers, Alex Laude, Peter Bajcsy, Ulrike Boehm, Caterina Strambio-De-Castillia, Damir Sudar, Orestis Faklaris, Glyn Nelson, Mathias Hammer, Nathalie Gaudreault, Farzin Farzam, Carlas Smith, Claire M. Brown, Roland Nitschke, Alexander D. Corbett, Judith Lacoste, Jaime A. Pimentel, Alison J. North, Alessandro Rigano, David Grunwald

Publikováno v: Nat Methods

1 -ABSTRACTDigital light microscopy provides powerful tools for quantitatively probing the real-time dynamics of subcellular structures. While the power of modern microscopy techniques is undeniable, rigorous record-keeping and quality control are re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ecbd113a5e98e72700c29cfdfd4a75ba
https://doi.org/10.1038/s41592-021-01327-9

Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

Autor: James J. Chambers, Karl D. Bellve, Glyn Nelson, Claire M. Brown, Serkan Utku Öztürk, Willa Y. Ma, Jaime A. Pimentel, Orestis Faklaris, Michelle S. Itano, Mathias Hammer, Daniel P. Keeley, Marco Marcello, David Grunwald, Ulrike Boehm, Alessandro Rigano, Koray Kirli, Caterina Strambio-De-Castillia, Alexander Balashov, Alex Laude, Shannon Ehmsen, Judith Lacoste, Joel Ryan, Robert A. Coleman, Burak H. Alver, Stefanie Weidtkamp-Peters, Anna B Hamacher, Susanne Kunis, Roland Nitschke, Paula Montero-Llopis, Andrea Cosolo, Thomas Guilbert, Peter J. Park, Kevin E. Fogarty

Publikováno v: Nature Methods

For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source softw

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bbdce25ab751ee657049d9d950016d72
https://pubmed.ncbi.nlm.nih.gov/34952955

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Autor: Glyn Nelson, Ulrike Boehm, Steve Bagley, Peter Bajcsy, Johanna Bischof, Brown, Claire M., Aurelien Dauphin, Dobbie, Ian M., Eriksson, John E., Orestis Faklaris, Julia Fernandez-Rodriguez, Alexia Ferrand, Laurent Gelman, Ali Gheisari, Hella Hartmann, Christian Kukat, Alex Laude, Miso Mitkovski, Sebastian Munck, North, Alison J., Rasse, Tobias M., Ute Resch-Genger, Schuetz, Lucas C., Arne Seitz, Caterina Strambio-De-Castillia, Swedlow, Jason R., Ioannis Alexopoulos, Karin Aumayr, Sergiy Avilov, Gert-Jan Bakker, Bammann, Rodrigo R., Andrea Bassi, Hannes Beckert, Sebastian Beer, Yury Belyaev, Jakob Bierwagen, Birngruber, Konstantin A., Manel Bosch, Juergen Breitlow, Cameron, Lisa A., Joe Chalfoun, Chambers, James J., Chieh-Li Chen, Eduardo Conde-Sousa, Corbett, Alexander D., Cordelieres, Fabrice P., Elaine del Nery, Ralf Dietzel, Frank Eismann, Elnaz Fazeli, Andreas Felscher, Hans Fried, Nathalie Gaudreault, Wah Ing Goh, Thomas Guilbert, Roland Hadleigh, Peter Hemmerich, Holst, Gerhard A., Itano, Michelle S., Jaffe, Claudia B., Jambor, Helena K., Jarvis, Stuart C., Antje Keppler, David Kirchenbuechler, Marcel Kirchner, Norio Kobayashi, Gabriel Krens, Susanne Kunis, Judith Lacoste, Marco Marcello, Martins, Gabriel G., Metcalf, Daniel J., Mitchell, Claire A., Joshua Moore, Tobias Mueller, Nelson, Michael S., Stephen Ogg, Shuichi Onami, Palmer, Alexandra L., Perrine Paul-Gilloteaux, Pimentel, Jaime A., Laure Plantard, Santosh Podder, Elton Rexhepaj, Michael Royeck, Arnaud Royon, Saari, Markku A., Damien Schapman, Vincent Schoonderwoert, Britta Schroth-Diez, Stanley Schwartz, Michael Shaw, Martin Spitaler, Stoeckl, Martin T., Damir Sudar, Jeremie Teillon, Stefan Terjung, Roland Thuenauer, Wilms, Christian D., Wright, Graham D., Roland Nitschke

Publikováno v: J Microsc
Journal of Microscopy
Journal of Microscopy, 284, 1, pp. 56-73
HAL
Journal of Microscopy, 284, 56-73
Journal of microscopy 284(1), 56-73 (2021). doi:10.1111/jmi.13041

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common interest in achie

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e8e185abb968d014bf8c4eb65e376f26

Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

Autor: Alessandro Rigano, Shannon Ehmsen, Serkan Utku Öztürk, Joel Ryan, Alexander Balashov, Mathias Hammer, Koray Kirli, Ulrike Boehm, Claire M. Brown, Karl Bellve, James J. Chambers, Andrea Cosolo, Robert A. Coleman, Orestis Faklaris, Kevin E. Fogarty, Thomas Guilbert, Anna B. Hamacher, Michelle S. Itano, Daniel P. Keeley, Susanne Kunis, Judith Lacoste, Alex Laude, Willa Y. Ma, Marco Marcello, Paula Montero-Llopis, Glyn Nelson, Roland Nitschke, Jaime A. Pimentel, Stefanie Weidtkamp-Peters, Peter J. Park, Burak H. Alver, David Grunwald, Caterina Strambio-De-Castillia

Publikováno v: Nature Methods. 19:256-256

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2ac69504d51164a373b776ff743c52d8
https://doi.org/10.1038/s41592-021-01388-w