Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Judith A. H. Wodke"'
Autor:
Björn Goldenbogen, Stephan O. Adler, Oliver Bodeit, Judith A. H. Wodke, Ximena Escalera‐Fanjul, Aviv Korman, Maria Krantz, Lasse Bonn, Rafael Morán‐Torres, Johanna E. L. Haffner, Maxim Karnetzki, Ivo Maintz, Lisa Mallis, Hannah Prawitz, Patrick S. Segelitz, Martin Seeger, Rune Linding, Edda Klipp
Publikováno v:
Advanced Science, Vol 9, Iss 23, Pp n/a-n/a (2022)
Abstract Reaching population immunity against COVID‐19 is proving difficult even in countries with high vaccination levels. Thus, it is critical to identify limits of control and effective measures against future outbreaks. The effects of nonpharma
Externí odkaz:
https://doaj.org/article/875b6877efed45239e502ea13f2eb566
Autor:
Judith A. H. Wodke, Oskar Knittelfelder, Jacobo Miranda Ackerman, Eleonora Patsenker, Malte von Bonin, Thomas Berg, Jochen Hampe, Alexander Hendricks, Veera Raghavan Thangapandi, Witigo von Schönfels, Triantafyllos Chavakis, Andreas Dahl, Elmar Aigner, S Nehring, Olga Vvedenskaya, A Herrmann, Andrej Shevchenko, Edda Klipp, Josch K. Pauling, Felix Stickel, Christian Datz, Pallavi Subramanian, Devavrat Ravindra Rekhade, Stephan Buch, Sebastian Hinz, Sebastian Zeissig, Clemens Schafmayer, Madlen Matz-Soja, Klaus Huse, Christoph Röcken, Marina Nati, Mario Brosch
Publikováno v:
Gut
Gut 70, 940-950 (2021)
Gut 70, 940-950 (2021)
ObjectiveThe rs641738C>T variant located near the membrane-bound O-acyltransferase domain containing 7 (MBOAT7) locus is associated with fibrosis in liver diseases, including non-alcoholic fatty liver disease (NAFLD), alcohol-related liver disease, h
Autor:
Kiran Raosaheb Patil, Jens Nielsen, Vassily Hatzimanikatis, Hyun Uk Kim, Nathan D. Price, Edda Klipp, Parizad Babaei, Lars K. Nielsen, Moritz Emanuel Beber, Sang Yup Lee, Radhakrishnan Mahadevan, Meiyappan Lakshmanan, Lars M. Blank, Jon Olav Vik, Steffen Klamt, Nikolaus Sonnenschein, Saeed Shoaie, Bernhard O. Palsson, Georgios Fengos, Christian Diener, Christopher S. Henry, Andreas Dräger, Janaka N. Edirisinghe, Daniel Machado, Beatriz García-Jiménez, Osbaldo Resendis-Antonio, Hongwu Ma, Peter J. Schaap, Dong-Yup Lee, Wout van Helvoirt, José P. Faria, Judith A. H. Wodke, Adam M. Feist, Siddharth Chauhan, Isabel Rocha, Henning Hermjakob, Qianqian Yuan, Brett G. Olivier, Rahuman S. Malik Sheriff, Markus J. Herrgård, Frank Bergmann, Adil Mardinoglu, Anne Richelle, Filipe Liu, Joana C. Xavier, Maksim Zakhartsev, Paulo Vilaça, Cheng Zhang, Ronan M. T. Fleming, Birgitta E. Ebert, Gregory L. Medlock, Ali Kaafarani, Nathan E. Lewis, Mark G. Poolman, Intawat Nookaew, Jonathan M. Monk, Jason A. Papin, Benjamin Sanchez, Christian Lieven, Matthias König, Juan Nogales, Paulo Maia, Sunjae Lee, Jasper J. Koehorst, Meriç Ataman, Jennifer A. Bartell, Bas Teusink, Kevin Correia, Zachary A. King
Publikováno v:
Nature Biotechnology
Lieven, C, Beber, M E, Olivier, B G, Bergmann, F T, Ataman, M, Babaei, P, Bartell, J A, Blank, L M, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, B E, Edirisinghe, J N, Faria, J P, Feist, A M, Fengos, G, Fleming, R M T, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, C S, Hermjakob, H, Herrgard, M J, Kaafarani, A, Kim, H U, King, Z, Klamt, S, Klipp, E, Koehorst, J J, König, M, Lakshmanan, M, Lee, D-Y, Lee, S Y, Lee, S, Lewis, N E, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, G L, Monk, J M, Nielsen, J, Nielsen, L K, Nogales, J, Nookaew, I, Palsson, B O, Papin, J A, Patil, K R, Poolman, M, Price, N D, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, B J, Schaap, P J, Malik Sheriff, R S, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaca, P, Vik, J O, Wodke, J A H, Xavier, J C, Yuan, Q, Zakhartsev, M & Zhang, C 2020, ' MEMOTE for standardized genome-scale metabolic model testing ', Nature Biotechnology, vol. 38, no. 3, pp. 272-276 . https://doi.org/10.1038/s41587-020-0446-y
Nature Biotechnology, 38(3), 272-276. Nature Publishing Group
Nature Biotechnology, 38(3), 272-276
Nature Biotechnology 38 (2020) 3
Nature biotechnology 38, 272-276 (2020). doi:10.1038/s41587-020-0446-y
Lieven, C, Beber, M E, Olivier, B G, Bergmann, F T, Ataman, M, Babaei, P, Bartell, J A, Blank, L M, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, B E, Edirisinghe, J N, Faria, J P, Feist, A M, Fengos, G, Fleming, R M T, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, C S, Hermjakob, H, Herrgård, M J, Kaafarani, A, Kim, H U, King, Z, Klamt, S, Klipp, E, Koehorst, J J, König, M, Lakshmanan, M, Lee, D Y, Lee, S Y, Lee, S, Lewis, N E, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, G L, Monk, J M, Nielsen, J, Nielsen, L K, Nogales, J, Nookaew, I, Palsson, B O, Papin, J A, Patil, K R, Poolman, M, Price, N D, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, B J, Schaap, P J, Malik Sheriff, R S, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaça, P, Vik, J O, Wodke, J A H, Xavier, J C, Yuan, Q, Zakhartsev, M & Zhang, C 2020, ' MEMOTE for standardized genome-scale metabolic model testing ', Nature Biotechnology, vol. 38, no. 3, pp. 272-276 . https://doi.org/10.1038/s41587-020-0446-y
Digital.CSIC. Repositorio Institucional del CSIC
instname
Lieven, C, Beber, M E, Olivier, B G, Bergmann, F T, Ataman, M, Babaei, P, Bartell, J A, Blank, L M, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, B E, Edirisinghe, J N, Faria, J P, Feist, A M, Fengos, G, Fleming, R M T, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, C S, Hermjakob, H, Herrgard, M J, Kaafarani, A, Kim, H U, King, Z, Klamt, S, Klipp, E, Koehorst, J J, König, M, Lakshmanan, M, Lee, D-Y, Lee, S Y, Lee, S, Lewis, N E, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, G L, Monk, J M, Nielsen, J, Nielsen, L K, Nogales, J, Nookaew, I, Palsson, B O, Papin, J A, Patil, K R, Poolman, M, Price, N D, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, B J, Schaap, P J, Malik Sheriff, R S, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaca, P, Vik, J O, Wodke, J A H, Xavier, J C, Yuan, Q, Zakhartsev, M & Zhang, C 2020, ' MEMOTE for standardized genome-scale metabolic model testing ', Nature Biotechnology, vol. 38, no. 3, pp. 272-276 . https://doi.org/10.1038/s41587-020-0446-y
Nature Biotechnology, 38(3), 272-276. Nature Publishing Group
Nature Biotechnology, 38(3), 272-276
Nature Biotechnology 38 (2020) 3
Nature biotechnology 38, 272-276 (2020). doi:10.1038/s41587-020-0446-y
Lieven, C, Beber, M E, Olivier, B G, Bergmann, F T, Ataman, M, Babaei, P, Bartell, J A, Blank, L M, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, B E, Edirisinghe, J N, Faria, J P, Feist, A M, Fengos, G, Fleming, R M T, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, C S, Hermjakob, H, Herrgård, M J, Kaafarani, A, Kim, H U, King, Z, Klamt, S, Klipp, E, Koehorst, J J, König, M, Lakshmanan, M, Lee, D Y, Lee, S Y, Lee, S, Lewis, N E, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, G L, Monk, J M, Nielsen, J, Nielsen, L K, Nogales, J, Nookaew, I, Palsson, B O, Papin, J A, Patil, K R, Poolman, M, Price, N D, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, B J, Schaap, P J, Malik Sheriff, R S, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaça, P, Vik, J O, Wodke, J A H, Xavier, J C, Yuan, Q, Zakhartsev, M & Zhang, C 2020, ' MEMOTE for standardized genome-scale metabolic model testing ', Nature Biotechnology, vol. 38, no. 3, pp. 272-276 . https://doi.org/10.1038/s41587-020-0446-y
Digital.CSIC. Repositorio Institucional del CSIC
instname
Supplementary information is available for this paper at https://doi.org/10.1038/s41587-020-0446-y
Reconstructing metabolic reaction networks enables the development of testable hypotheses of an organisms metabolism under different conditions1.
Reconstructing metabolic reaction networks enables the development of testable hypotheses of an organisms metabolism under different conditions1.
Autor:
Judith A. H. Wodke, Oskar Knittelfelder, Rekhade D Ravindra, Olga Vvedenskaya, Elmar Aigner, Andreas Dahl, Josch Konstantin Pauling, Triantafyllos Chavakis, Stephan Buch, A Herrmann, M von Bonin, Sebastian Hinz, S Nehring, Edda Klipp, Anna Shevchenko, Christoph Röcken, Thomas Berg, Pallavi Subramanian, Madlen Matz-Soja, Christian Datz, Felix Stickel, J Miranda Ackerman, Veera Raghavan Thangapandi, Jochen Hampe, Eleonora Patsenker, Alexander Hendricks, W von Schönfels, Klaus Huse, Clemens Schafmayer, Sebastian Zeissig, Mario Brosch, Marina Nati
Publikováno v:
Viszeralmedizin 2021 Gemeinsame Jahrestagung Deutsche Gesellschaft für Gastroenterologie, Verdauungs- und Stoffwechselkrankheiten (DGVS), Sektion Endoskopie der DGVS, Deutsche Gesellschaft für Allgemein und Viszeralchirurgie (DGAV).
Autor:
Lasse Bonn, Lisa Mallis, Ivo Maintz, Maxim Karnetzki, Ximena Escalera-Fanjul, Maria Krantz, Aviv Korman, Johanna El Haffner, Rafael Ubaldo Moran Torres, Martin Seeger, Edda Klipp, Hannah Prawitz, Oliver Bodeit, Björn Goldenbogen, Patrick Steven Segelitz, Stephan O. Adler, Judith A. H. Wodke, Rune Linding
Reaching population immunity against COVID-19 is proving difficult even in countries with high vaccination levels. We demonstrate that this in part is due to heterogeneity and stochasticity resulting from community-specific human-human interaction an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::295b8e967f2aa8c12b7d11d892ff842c
https://doi.org/10.21203/rs.3.rs-716282/v1
https://doi.org/10.21203/rs.3.rs-716282/v1
Autor:
Johanna El Haffner, Edda Klipp, Maria Krantz, Lisa Mallis, Rafael Ubaldo Moran Torres, Stephan O. Adler, Patrick Steven Segelitz, Martin Seeger, Judith A. H. Wodke, Ximena Escalera-Fanjul, Aviv Korman, Hannah Prawitz, Oliver Bodeit, Lasse Bonn, Ivo Maintz, Rune Linding, Bjoern Goldenbogen, Maxim Karnetzki
Interactions between humans cause transmission of SARS-CoV-2. We demonstrate that heterogeneity in human-human interactions give rise to non-linear infection networks that gain complexity with time. Consequently, targeted vaccination strategies are c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d8c346fa230a78268413742fe3d23567
https://doi.org/10.21203/rs.3.rs-128597/v1
https://doi.org/10.21203/rs.3.rs-128597/v1
Autor:
Isabel Rocha, Jon Olav Vik, Jonathan Monk, Kiran Raosaheb Patil, Christopher S. Henry, Jason A. Papin, Rahuman S. Malik Sheriff, Gregory L. Medlock, Jasper J. Koehorst, Meriç Ataman, Juan Nogales, Ali Kaafarani, Radhakrishnan Mahadevan, Adil Mardinoglu, Anne Richelle, Janaka N. Edirisinghe, Qianqian Yuan, Paulo Maia, Bas Teusink, José P. Faria, Brett G. Olivier, Intawat Nookaew, Lars M. Blank, Cheng Zhang, Meiyappan Lakshmanan, Hongwu Ma, Ronan M. T. Fleming, Beatriz García-Jiménez, Andreas Dräger, Nathan D. Price, Filipe Liu, Joana C. Xavier, Daniel Machado, Jennifer A. Bartell, Sunjae Lee, Osbaldo Resendis-Antonio, Hyun Uk Kim, Edda Klipp, Henning Hermjakob, Kevin Correia, Parizad Babaei, Peter J. Schaap, Christian Diener, Benjamin Sanchez, Markus J. Herrgård, Frank Bergmann, Jens Nielsen, Siddharth Chauhan, Zachary A. King, Wout van Helvoirt, Steffen Klamt, Nathan E. Lewis, Mark G. Poolman, Nikolaus Sonnenschein, Dong-Yup Lee, Christian Lieven, Maksim Zakhartsev, Paulo Vilaça, Matthias König, Birgitta E. Ebert, Georgios Fengos, Bernhard O. Palsson, Adam M. Feist, Judith A. H. Wodke, Saeed Shoaie, Vassily Hatzimanikatis, Lars K. Nielsen, Moritz Emanuel Beber, Sang Yup Lee
Publikováno v:
Nature Biotechnology 38 (2020) 4
Nature biotechnology, vol 38, iss 4
Nature Biotechnology, 38(4)
Nature Biotechnology, 38, 504. NATURE PUBLISHING GROUP
Nature biotechnology 38, 504-504 (2020). doi:10.1038/s41587-020-0477-4
Nature biotechnology, vol 38, iss 4
Nature Biotechnology, 38(4)
Nature Biotechnology, 38, 504. NATURE PUBLISHING GROUP
Nature biotechnology 38, 504-504 (2020). doi:10.1038/s41587-020-0477-4
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
(undefined)
info:eu-repo/semantics/publishedVersion
(undefined)
info:eu-repo/semantics/publishedVersion
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0bee9d532b56132ff2a658c2f469b1bb
https://research.wur.nl/en/publications/publisher-correction-memote-for-standardized-genome-scale-metabol
https://research.wur.nl/en/publications/publisher-correction-memote-for-standardized-genome-scale-metabol
Autor:
Edda Klipp, Stefan Wölfl, Ralf Mrowka, Xinlai Cheng, Judith A. H. Wodke, Holger Becker, H Gaitantzi, Steven Dooley, Katja Breitkopf-Heinlein, Guangqi Song, Ali Ghanem, Jannick Theobald
Publikováno v:
Archives of Toxicology. 92:1133-1149
The metabolic activity of hepatocytes is a central prerequisite for drug activity and a key element in drug-drug interaction. This central role in metabolism largely depends on the activity of the cytochrome P450 (CYP450) enzyme family, which is not
Autor:
Hongwu Ma, Judith A. H. Wodke, Ronan M. T. Fleming, Steffen Klamt, Vassily Hatzimanikatis, Janaka N. Edirisinghe, Christian Lieven, Nathan D. Price, Edda Klipp, Meiyappan Lakshmanan, Matthias König, Jennifer A. Bartell, Daniel Machado, B. E. Ebert, Lars K. Nielsen, Georgios Fengos, Juan Nogales, Moritz Emanuel Beber, Sang Yup Lee, Andreas Dräger, Hyun Uk Kim, Dong-Yup Lee, Rahuman S. Malik Sheriff, Beatriz García-Jiménez, Osbaldo Resendis-Antonio, Parizad Babaei, Sunjae Lee, Adam M. Feist, Adil Mardinoglu, Benjamin Sanchez, Peter J. Schaap, José P. Faria, Anne Richelle, Jonathan M. Monk, Paulo Maia, Markus J. Herrgård, Jason A. Papin, Frank Bergmann, Siddharth Chauhan, Saeed Shoaie, Wout van Helvoirt, Jon Olav Vik, Jasper J. Koehorst, Jens Nielsen, Meriç Ataman, Filipe Liu, Christopher S. Henry, Joana C. Xavier, Gregory L. Medlock, Maksim Zakhartsev, Paulo Vilaça, Ali Kaafarani, Nikolaus Sonnenschein, Intawat Nookaew, Bernhard O. Palsson, Nathan E. Lewis, Mark G. Poolman, Cheng Zhang, Radhakrishnan Mahadevan, Bas Teusink, Isabel Rocha, Christian Diener, Kevin Correia, Zachary A. King, Lars M. Blank, Kiran Raosaheb Patil, Henning Hermjakob, Qianqian Yuan, Brett G. Olivier
Publikováno v:
bioRxiv
Several studies have shown that neither the formal representation nor the functional requirements of genome-scale metabolic models (GEMs) are precisely defined. Without a consistent standard, comparability, reproducibility, and interoperability of mo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e8bd74c6bd0c3c153194a6dfd59e812
https://doi.org/10.1101/350991
https://doi.org/10.1101/350991
Autor:
Guglielmo Roma, Judith A. H. Wodke, Christina Pesavento, Vera van Noort, Peer Bork, Maria Lluch-Senar, Marco L. Hennrich, Luis Serrano, Eva Yus, Andreu Alibés, Daniel R. Mende, Athanasios Typas, Anne-Claude Gavin, Wei-Hua Chen
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 44(3), 1192-1202
Nucleic Acids Research, Vol. 44, No 3 (2016) pp. 1192-1202
Nucleic Acids Research, 44(3), 1192-1202
Nucleic Acids Research, Vol. 44, No 3 (2016) pp. 1192-1202
We developed a comprehensive resource for the genome-reduced bacterium Mycoplasma pneumoniae comprising 1748 consistently generated '-omics' data sets, and used it to quantify the power of antisense non-coding RNAs (ncRNAs), lysine acetylation, and p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4716d591406d5f9dbee7347e399b4948
http://hdl.handle.net/10230/26807
http://hdl.handle.net/10230/26807